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AAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTATTTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttccatttgcttgttcatttgttttcccgcttcattttaccttttgattaatggaagcaatatttggattttgacagtggaagaactacacat...
species | Zea mays |
transcript | GRMZM2G153704_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTEST: gi|32832104|gb|CD971782.1|CD971782
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTEST: gi|61119088|gb|DN560049.1|DN560049
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: CTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTEST: gi|67035008|gb|CO463541.1|CO463541
genomic: CTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTEST: gi|67037358|gb|CO464198.1|CO464198
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTEST: gi|78075828|gb|DV504262.1|DV504262
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAAATGGTTGGATTTGCTGEST: gi|211050167|gb|FL124868.1|FL124868
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAA-TGTTTGGAATTGCTG
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTEST: gi|78078828|gb|DV507240.1|DV507240
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTEST: gi|32847646|gb|CD987327.1|CD987327
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTEST: gi|32835079|gb|CD974757.1|CD974757
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTEST: gi|148953947|gb|EC899333.2|EC899333
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTEST: gi|22545719|gb|BU098078.1|BU098078
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCT
EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTATTTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttccatttgcttgttcatttgttttcccgcttcattttaccttttgattaatggaagcaatatttggattttgacagtggaagaactacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA