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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAGgtaatgcatggatccaaattccatagatttaacaatgtaatttataatgttattcaggggctgaatccattaatgtttacttttgctttagtgggaaatt...

Basic information

species Zea mays
transcript GRMZM2G153434_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153434_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g16170.3 (Oryza sativa), 5'ss of exon 10
-----------------------------------------GGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAGgtaatgcatggatccaaattc-catagatttaacaat-gtaatttata----------atgttattcaggggctgaatcca---ttaatgtttacttttgctttagtgggaaatt----------------
                                         || || |||||| | |||||||| ||||| ||| ||||||||   |||||||| ||||||||||  ||| |   || ||    ||||||||   ||  | |  | |           ||   ||  |   | || |  ||   ||||  |  |||||| || |  |      |                 
CTTCTATTGTGTAACTCCTTTTGACTTCTAATTTCATTCAGGGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACGTTGGAAGgtaatatatgaagttaactttatctagatttagttattatgacctgttgattgcccgtataacatatataaggtgcacgcaattttaaaatggacttttactgttatcacgtttcttgttttccaatgcag

upper sequence: GRMZM2G153434_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g16170.5 (Oryza sativa), 5'ss of exon 7
GGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAGgtaatgcatggatccaaattc-catagatttaacaat-gtaatttata----------atgttattcaggggctgaatcca---ttaatgtttacttttgctttagtgggaaatt----------------
|| || |||||| | |||||||| ||||| ||| ||||||||   |||||||| ||||||||||  ||| |   || ||    ||||||||   ||  | |  | |           ||   ||  |   | || |  ||   ||||  |  |||||| || |  |      |                 
GGACTCAATCCACTAATGTTTACTTTTGCATTAGTGGGAAATGTGACATACGTTGGAAGgtaatatatgaagttaactttatctagatttagttattatgacctgttgattgcccgtataacatatataaggtgcacgcaattttaaaatggacttttactgttatcacgtttcttgttttccaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37375735|gb|CF624325.1|CF624325
EST:     CCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAG                         TATACTTGTAAATAGCTTGGACTGGTCGAAACTTAGACCAAATCTCCCGTG
genomic: CCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAGgtaatgcatg ... ttcaatgcagTATACTTGTAAATAGCTTGGACTGGTCGAAACTTAGACCAAATCTCCCGTG
EST: gi|89106847|gb|DY577064.1|DY577064
EST:     CCATTGATGTTTACCTTTGCTTTACTGGGAAATTCA-CATACGTANGAAG                         TATACTTGTAA
genomic: CCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAGgtaatgcatg ... ttcaatgcagTATACTTGTAA