Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGACGGCACAGAGCATGACGTCTCGCCCAATGAAGGGGATGCTGACTGGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaactagagcaagaacggtttgatttctggtgctcagagcaccgttttcttcttccgtttttggtactgacgttgctcctcccatcttccag

Basic information

species Zea mays
transcript GRMZM2G149751_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149751_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os12g42876.1 (Oryza sativa), 5'ss of exon 10
CGAAGACGGCACAGAGCATGACGTCTCGCCCAATGAAGGGGATGCTGACTGGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaactagagc-aagaacg--gtttgatttctggtgctcagagcaccgttttcttcttccgtttttggtactgacgttgctcctcccatcttccag
| |||  ||| ||||||||||| |||||||| |||||||| ||| ||||||| || ||||||||||| |||||||| || ||| ||||||||||||||||||||||  ||   |   | || |   | | |||| |  || |         |  ||||| ||| |  | ||  | | |    |||    |          
CCAAGTTGGCGCAGAGCATGACCTCTCGCCCCATGAAGGGAATGTTGACTGGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGgtcagtgcctgttgttgataatgtaatctaatttgttctggttgtgaatgagcattctt-ttctgagtctgacattcatac-gctggctcag--------

upper sequence: GRMZM2G149751_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os12g42884.3 (Oryza sativa), 5'ss of exon 11
CGAAGACGGCACAGAGCATGACGTCTCGCCCAATGAAGGGGATGCTGACTGGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaactagagcaagaacggtttgatttctggtgctcagagcaccgttttcttcttccgtttttggtactgacgttgctcctcccatcttccag
| |||| ||| ||||||||||| |||||||| |||||||| ||| ||||||| || ||||||||||| |||||||| || ||| ||||||||||||||||||| ||  ||   |     | | |   ||      |  ||||    |  ||    | |     | |||   ||||| ||  | | | | |  ||   
CCAAGATGGCGCAGAGCATGACCTCTCGCCCCATGAAGGGAATGTTGACTGGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGgtccgtgcctgttgttg--atgatgcaatgctaattattcaggttgcgattgagctttc----tgttgaggctgacatt--ttcacacttgctcag-

upper sequence: GRMZM2G149751_T03 (Zea mays), 5'ss of exon 11
lower sequence: EFJ05611 (Selaginella moellendorffii), 5'ss of exon 9
CGAAGACGGCACAGAGCATGACGTCTCGCCCAATGAAGGGGATGCTGACTGGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaactagagcaagaacggtttgatttctggtgctcagagcaccgttttcttcttccgtttttggtactgacgttgctcctcccatcttccag
|        | |||||| | ||     | || |||||||| ||||| || || || || |||||  | ||||||||||||||| | |||||||||||||||| ||    |         |  |    || | || |     |     |||||  |||  |                                     
CTTCCTACTCGCAGAGCCTCACTAAGAGGCCCATGAAGGGAATGCTCACGGGACCCGTGACAATTTTGAACTGGTCCTTCGTCAGAAATGACCAGCCGAGgtgagcttttgtctttctcatcgac--atctttgctaactggccttacgtttcattcaccacag---------------------------------

upper sequence: GRMZM2G149751_T03 (Zea mays), 5'ss of exon 11
lower sequence: EFJ28889 (Selaginella moellendorffii), 5'ss of exon 9
CGAAGACGGCACAGAGCATGACGTCTCGCCCAATGAAGGGGATGCTGACTGGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaactagagcaagaacggtttgatttctggtgctcagagcaccgttttcttcttccgtttttggtactgacgttgctcctcccatcttccag
|        | |||||| | ||     | || |||||||| ||||| || || || || |||||  | ||||||||||||||| | |||||||||||||||| ||    |         |  |    || | || |     |     |||||  ||| | |      |                             
CTTCCTACTCGCAGAGCCTCACTAAGAGGCCCATGAAGGGAATGCTCACGGGACCCGTGACAATTTTGAACTGGTCCTTCGTCAGAAATGACCAGCCGAGgtgagcttttgtctttctcatcgac--atctttgctaactggtcttacgtttcattcattcaccacag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213188581|gb|FM196386.1|FM196386
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32850673|gb|CD990354.1|CD990354
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|33101453|gb|CF061413.1|CF061413
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32830462|gb|CD970140.1|CD970140
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|22521000|gb|BU079811.1|BU079811
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|33102405|gb|CF062365.1|CF062365
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|9794625|gb|BE552933.1|BE552933
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|6993933|gb|AW453147.1|AW453147
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32845865|gb|CD985546.1|CD985546
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32846752|gb|CD986433.1|CD986433
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|60396167|gb|DN229036.1|DN229036
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|60346583|gb|DN213556.1|DN213556
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|18963577|gb|BM660513.1|BM660513
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAACGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|22473155|gb|BU037635.1|BU037635
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|33100706|gb|CF060666.1|CF060666
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|33100744|gb|CF060704.1|CF060704
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|87155607|gb|DY400396.1|DY400396
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|211035272|gb|FL424823.1|FL424823
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|29130233|gb|CB380937.1|CB380937
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCA-CCGAG                         GGTTGAGACTTGCTACCAGATCGCTCTTGCG
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCG
EST: gi|32850674|gb|CD990355.1|CD990355
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32837636|gb|CD977314.1|CD977314
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32848812|gb|CD988493.1|CD988493
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32847463|gb|CD987144.1|CD987144
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|18963575|gb|BM660512.1|BM660512
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAACGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32838460|gb|CD978138.1|CD978138
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32837591|gb|CD977269.1|CD977269
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32830780|gb|CD970458.1|CD970458
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|33102362|gb|CF062322.1|CF062322
EST:     GGCCCAGTCGCAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|21432208|gb|BQ547698.1|BQ547698
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32845888|gb|CD985569.1|CD985569
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32850020|gb|CD989701.1|CD989701
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|22473206|gb|BU037686.1|BU037686
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|4753445|gb|AI657355.1|AI657355
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|26558957|gb|CA831192.1|CA831192
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|33101267|gb|CF061227.1|CF061227
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32849019|gb|CD988700.1|CD988700
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTT
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTT
EST: gi|32839141|gb|CD978822.1|CD978822
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|213188636|gb|FM184694.1|FM184694
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32802578|gb|CD954814.1|CD954814
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|149087939|gb|EE177184.2|EE177184
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|32850074|gb|CD989755.1|CD989755
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
EST: gi|33100968|gb|CF060928.1|CF060928
EST:     GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAG                         GTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA
genomic: GGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 762

CGAAGACGGCACAGAGCATGACGTCTCGCCCAATGAAGGGGATGCTGACTGGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGATCTTGAGGCTGGTGGTATTCAGGTTATCCAAATCGACGAGGCTGCACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 972

CGAAGACGGCACAGAGCATGACGTCTCGCCCAATGAAGGGGATGCTGACTGGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGATCTTGAGGCTGGTGGTATTCAGGTTATCCAAATCGACGAGGCTGCACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1099

CGAAGACGGCACAGAGCATGACGTCTCGCCCAATGAAGGGGATGCTGACTGGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGATCTTGAGGCTGGTGGTATTCAGGTTATCCAAATCGACGAGGCTGCACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 942

CGAAGACGGCACAGAGCATGACGTCTCGCCCAATGAAGGGGATGCTGACTGGCCCAGTCACAATCCTCAACTGGTCCTTCGTCCGGAATGACCAGCCGAGgtcagtaact ... catcttccagGTTTGAGACTTGCTACCAGATCGCTCTTGCGATCAAGAAGGAAGTCGAGGATCTTGAGGCTGGTGGTATTCAGGTTATCCAAATCGACGAGGCTGCACTG