1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGAAGGGCTGCCGCTCCGCAAGGCTGAGCATGCATTCTACTTGGACTGGGCTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctcttgaactgtgcgctgtggagcccttgccagtgtgggagaggttcacaccaacatttctttggcactccaaactgatttccttctgttggcag
species | Zea mays |
transcript | GRMZM2G149751_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32850673|gb|CD990354.1|CD990354
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|33101453|gb|CF061413.1|CF061413
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32830462|gb|CD970140.1|CD970140
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|87153535|gb|DY398324.1|DY398324
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATCACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|22521000|gb|BU079811.1|BU079811
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|33102405|gb|CF062365.1|CF062365
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|4647628|gb|AI622703.1|AI622703
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: TCAGAATTACCAACTGCGAGATCCAGGACNCCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|6993933|gb|AW453147.1|AW453147
genomic: TCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGGCCACTCCTTCAGAATTACCAACTGCGAGAGCCAGGACACCACCCAG ATCCACACCCACATGTEST: gi|32845865|gb|CD985546.1|CD985546
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGT
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32846752|gb|CD986433.1|CD986433
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|67010620|gb|CO439369.1|CO439369
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|18963577|gb|BM660513.1|BM660513
genomic: CAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATCACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|22473155|gb|BU037635.1|BU037635
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|60395451|gb|DN228321.1|DN228321
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|60346417|gb|DN213390.1|DN213390
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: GGACACCACCCAG ATCCACACCCACATGTGCTATTCCAACTTCAACGACATCATCCACTCGATCEST: gi|33100744|gb|CF060704.1|CF060704
genomic: GGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|33100706|gb|CF060666.1|CF060666
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|87155607|gb|DY400396.1|DY400396
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|22819322|gb|BU499412.1|BU499412
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGACATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTEST: gi|32850674|gb|CD990355.1|CD990355
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACT
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTTCGATEST: gi|32857586|gb|CD997267.1|CD997267
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACT-CGAT
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32837636|gb|CD977314.1|CD977314
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACAAAATCEST: gi|32842126|gb|CD981807.1|CD981807
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: GAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32929695|gb|CF034507.1|CF034507
genomic: GAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: TGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCNCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATEST: gi|32848812|gb|CD988493.1|CD988493
genomic: TGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACC-CAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGAT
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32847463|gb|CD987144.1|CD987144
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|148996046|gb|EE035300.2|EE035300
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CCAACTGCGAGATCCAGGAC-CCACCCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATEST: gi|18963575|gb|BM660512.1|BM660512
genomic: CCAACTGCGAGATCCAGGACACCA-CCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGAT
EST: CTGTCCACTCCTTCAGAATCACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|78544065|gb|DV621563.1|DV621563
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: ATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|148959015|gb|EE010530.2|EE010530
genomic: ATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|149087939|gb|EE177184.2|EE177184
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32837591|gb|CD977269.1|CD977269
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTAGNA-EST: gi|32830780|gb|CD970458.1|CD970458
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCG-AT
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32837615|gb|CD977293.1|CD977293
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: TGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCAATCEST: gi|33102362|gb|CF062322.1|CF062322
genomic: TGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32929720|gb|CF034532.1|CF034532
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32845888|gb|CD985569.1|CD985569
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32850020|gb|CD989701.1|CD989701
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|4753445|gb|AI657355.1|AI657355
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|26558957|gb|CA831192.1|CA831192
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|33101267|gb|CF061227.1|CF061227
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCEST: gi|32839141|gb|CD978822.1|CD978822
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGEST: gi|213188636|gb|FM184694.1|FM184694
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATG
EST: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGGGCTGCCGCTCCGCAAGGCTGAGCATGCATTCTACTTGGACTGGGCTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctcttgaactgtgcgctgtggagcccttgccagtgtgggagaggttcacaccaacatttctttggcactccaaactgatttccttctgttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC