1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCCAGTGTTTGGTTAGGAAGATCGTGCATGTGCTCAAGAGAGCATCGCTTATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacctattgataactcattgacttgctacttagctttaaacttggcaaattgctaacctgataccgctccaagttgaattgaactaaacgtaccg...
species | Zea mays |
transcript | GRMZM2G149576_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|78104607|gb|DV523025.1|DV523025
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|76917338|gb|DV166773.1|DV166773
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|71772905|gb|DR970828.1|DR970828
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|78082191|gb|DV510603.1|DV510603
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|37388342|gb|CF631379.1|CF631379
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: CGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|37388821|gb|CF631623.1|CF631623
genomic: CGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATNGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|76013548|gb|DT940718.1|DT940718
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|18171482|gb|BM341322.1|BM341322
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: A-TGNTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|14244470|gb|BG842452.2|BG842452
genomic: ATTG-TCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|78111898|gb|DV530295.1|DV530295
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|78088724|gb|DV517117.1|DV517117
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|78117851|gb|DV536238.1|DV536238
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|13198414|gb|BG354309.1|BG354309
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|13316011|gb|BG410458.1|BG410458
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGGCTTCATCCTCTCCTCTGNTATCTTTGTTTGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|94472463|gb|EB701421.1|EB701421
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|148945266|gb|EC890476.2|EC890476
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: GTCAGTGCTCTTACGATGG GGGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|78115007|gb|DV533395.1|DV533395
genomic: GTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|44900512|gb|CK827057.1|CK827057
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|211390817|gb|FL199661.1|FL199661
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|149099894|gb|EE185946.2|EE185946
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|88750877|gb|DY535018.1|DY535018
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|33099896|gb|CF059856.1|CF059856
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCTTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|71429318|gb|DR810368.1|DR810368
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATTTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|33099796|gb|CF059756.1|CF059756
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCTTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|91877727|gb|EB407684.1|EB407684
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAA-ATAEST: gi|71769873|gb|DR967810.1|DR967810
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|78115006|gb|DV533394.1|DV533394
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|116820526|gb|EC863749.1|EC863749
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGCCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|211009898|gb|FL446472.1|FL446472
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|37387083|gb|CF630734.1|CF630734
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|93282424|gb|EB674688.1|EB674688
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|91052630|gb|EB163048.1|EB163048
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|71769067|gb|DR967004.1|DR967004
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|78179154|gb|DV549527.1|DV549527
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|149081527|gb|EE170663.2|EE170663
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATAEST: gi|37398769|gb|CF636702.1|CF636702
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
EST: TATTGTCTTCATCCTCTCCTCTGTNATCTTCGTCAGTGCTCTTACGATGG GTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
genomic: TATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacct ... tgagtttcagGTGTCGTTGGAACCCAGAAGAGCATTTCGATGATCAACAATCACGAATATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCAGTGTTTGGTTAGGAAGATCGTGCATGTGCTCAAGAGAGCATCGCTTATTGTCTTCATCCTCTCCTCTGTTATCTTCGTCAGTGCTCTTACGATGGgtatgaacctattgataactcattgacttgctacttagctttaaacttggcaaattgctaacctgataccgctccaagttgaattgaactaaacgtaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgctcc