1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTACGTGTTCGGGCTCACCCATATCCCCAGGCTAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctttactttttttttttcagtatatcctgtcataggcagtgaaccatcgggaccctttgttgcttcttcgcaaagagatggttagcctaactttggtcgtttctaatggctaatgatgtttctgccctgcag
species | Zea mays |
transcript | GRMZM2G147884_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|211381837|gb|FL377365.1|FL377365
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|50326819|gb|CO521945.1|CO521945
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTNCA-CTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCEST: gi|86856190|gb|DY307201.1|DY307201
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTT-CAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTC
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|211487243|gb|FL369769.1|FL369769
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|50326828|gb|CO521954.1|CO521954
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|211542541|gb|FL409069.1|FL409069
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|67025362|gb|CO454111.1|CO454111
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAACTCGEST: gi|161590852|gb|EY958764.1|EY958764
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: CGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCC-AGCTCGEST: gi|60397137|gb|DN229953.1|DN229953
genomic: CGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|60353904|gb|DN220877.1|DN220877
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|50326829|gb|CO521955.1|CO521955
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|88758266|gb|DY542407.1|DY542407
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|33942632|gb|CF349232.1|CF349232
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|4730397|gb|AI649563.1|AI649563
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|211466963|gb|FL423374.1|FL423374
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|60355304|gb|DN222277.1|DN222277
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|40337526|gb|CK371596.1|CK371596
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|21621426|gb|BQ619432.1|BQ619432
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|40334154|gb|CK368224.1|CK368224
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|113795973|gb|DW912970.1|DW912970
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: AGAAGATTGGCCNAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACEST: gi|78022408|gb|DV490795.1|DV490795
genomic: AGAAGATTGGCC-AGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAAC
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|60339780|gb|DN206753.1|DN206753
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|88754474|gb|DY538615.1|DY538615
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|8102998|gb|AW927666.1|AW927666
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGTGGTCTACGTGCCTCCCAGCTCGEST: gi|37400365|gb|CF637533.1|CF637533
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|60399063|gb|DN231878.1|DN231878
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCGEST: gi|60355314|gb|DN222287.1|DN222287
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
EST: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATG CCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
genomic: TAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctt ... tgccctgcagCCACATGGATTCTTCAACTGCTCGCCTGCGGTCGACGTGCCTCCCAGCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGTGTTCGGGCTCACCCATATCCCCAGGCTAGAAGATTGGCCAGTCATGCCGGTGGAGCACATAGGCTTCATGCTCATGgtatcagctttactttttttttttcagtatatcctgtcataggcagtgaaccatcgggaccctttgttgcttcttcgcaaagagatggttagcctaactttggtcgtttctaatggctaatgatgtttctgccctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA