1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGTGCCTTTACTATGCAACACTTCGATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACGgtgcgtctatggaaccataccctctttgatatgttctgtttggataatttgaattcttcatttactatacttctgtttgcag
species | Zea mays |
transcript | GRMZM2G147811_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACG GCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTTTGEST: gi|32945651|gb|CF050470.1|CF050470
genomic: ATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACGgtgcgtctat ... ctgtttgcagGCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTTTG
EST: ATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACG GCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTTEST: gi|160481281|gb|EY254203.1|EY254203
genomic: ATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACGgtgcgtctat ... ctgtttgcagGCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTT
EST: ATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACG GCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTTTGEST: gi|166555098|gb|EG040904.1|EG040904
genomic: ATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACGgtgcgtctat ... ctgtttgcagGCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTTTG
EST: TGCTACCGAGGAGGATCCTGTGACAAAAACG GCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTTTGEST: gi|32932428|gb|CF037240.1|CF037240
genomic: TGCTACCGAGGAGGATCCTGTGACAAAAACGgtgcgtctat ... ctgtttgcagGCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTTTG
EST: ATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACG GCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTTTG
genomic: ATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACGgtgcgtctat ... ctgtttgcagGCTGTGAGAAGGTTAATTTTGAACATTAAACCAAAGGATGTTGGTTCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCCTTTACTATGCAACACTTCGATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACGgtgcgtctatggaaccataccctctttgatatgttctgtttggataatttgaattcttcatttactatacttctgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT