1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCTACAAATCTCTTTGTCTCTCATTTAGGCAATGGTACTCTGATACCTCATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctccctctcctttttttatagcttgttggaattagatgtaggaagtattatcaacattgtttaactattagtttatcaagcaattttaaaatcc...
species | Zea mays |
transcript | GRMZM2G147430_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAATEST: gi|211304399|gb|FL124099.1|FL124099
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG ATTATGAACATAACAAGARGTCAGCGCCAGGTTATACATCAGCTCGACAATEST: gi|18172539|gb|BM347927.1|BM347927
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCNCCGATGATAGAAGAG ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTACAAATCTCTTTGTCTCTCATTTAGGCAATGGTACTCTGATACCTCATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctccctctcctttttttatagcttgttggaattagatgtaggaagtattatcaacattgtttaactattagtttatcaagcaattttaaaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctcc