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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTACAAATCTCTTTGTCTCTCATTTAGGCAATGGTACTCTGATACCTCATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctccctctcctttttttatagcttgttggaattagatgtaggaagtattatcaacattgtttaactattagtttatcaagcaattttaaaatcc...

Basic information

species Zea mays
transcript GRMZM2G147430_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147430_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 11
GCCTACAAATCTCTTTGTCTCTCATTTAGGCAATGGTACTCTGATACCTCATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctccctctcctttttttatagcttgttggaattagatgtaggaagtattatcaacattg-tttaactattagttta--tcaagcaattttaaaatcc
 ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||  ||||| ||||| ||  | || ||||| |||  |   ||  | || | ||    |    ||  | | |||        || || || | | |||     || ||| |  | |||  ||  | ||    
ACCTACAAATCTCTTTGTTTCTCATTTGGGCAATGGTACCCTGATACCTCATTCGTCATCATCGAACCAACTTTTGAAGGAGTCCCCCATTGTGGATGAGgtatttgccttactgttattataatcttatacatgaggt-gttgtccccccacttttccacttggatttgtgggtttgttgaaattaagtcatacttaagg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32916804|gb|CF021616.1|CF021616
EST:     ACTTTCAAAGGATTCCCCGATGATAGAAGAG                         ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: gi|211196063|gb|FL124098.1|FL124098
EST:     ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG                         ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: gi|211304399|gb|FL124099.1|FL124099
EST:     ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG                         ATTATGAACATAACAAGARGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: gi|32944474|gb|CF049293.1|CF049293
EST:     ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG                         ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: gi|32945047|gb|CF049866.1|CF049866
EST:     ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG                         ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: gi|71324133|gb|DR798766.1|DR798766
EST:     ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG                         ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: gi|93281686|gb|EB673950.1|EB673950
EST:     ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG                         ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: gi|76292208|gb|DV031776.1|DV031776
EST:     ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG                         ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
EST: gi|60358530|gb|DN225503.1|DN225503
EST:     ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAG                         ATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT
genomic: ATTCTTCATCATCAAACCAACTTTCAAAGGATTCCCCGATGATAGAAGAGgtctttctcc ... tcctatgcagATTATGAACATAACAAGAGGTCAGCGCCAGGTTATACATCAGCTCGACAAT