1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattccttcgtccacgtctcctcgtcatcctcatcctctctgccgctatagcttattatgccgcttcctggacggacctgaacgatggcctgctttgcttctctgccgcagcag
species | Zea mays |
transcript | GRMZM2G146463_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|78113279|gb|DV531671.1|DV531671
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCNAGCCCGGCGGCTGGGACG ACCCTGACATGCTGGAGGTCGGGGACGGAGGCATGGCGTACAACGAGTACGEST: gi|71443279|gb|DR824329.1|DR824329
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|86465787|gb|DY232160.1|DY232160
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|78113278|gb|DV531670.1|DV531670
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|86466262|gb|DY232634.1|DY232634
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|22472587|gb|BU037067.1|BU037067
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|26560002|gb|CA832237.1|CA832237
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|71443417|gb|DR824467.1|DR824467
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|50334851|gb|CO529977.1|CO529977
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|60357458|gb|DN224431.1|DN224431
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|91874598|gb|EB404555.1|EB404555
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTTCGCCCGGTACGCCAAGCCCGGCGGGTGGGACG GCCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|149055656|gb|EE156361.2|EE156361
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTEST: gi|78075209|gb|DV503643.1|DV503643
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGT
EST: GACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCCGGCGGCTGGAACG ACCCTGACATGCTGGEST: gi|71318125|gb|DR795824.1|DR795824
genomic: GACCTGAACGACGCCTACGCCCGGTACGCCAAGCCC-GGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGG
EST: CGGCCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|91054334|gb|EB164752.1|EB164752
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CCGGTACGCCAAGCCCGGCGGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|149055655|gb|EE156360.2|EE156360
genomic: CCGGTACGCCAAGCCCGGC-GGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCGGAACGACGCTTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|26559550|gb|CA831785.1|CA831785
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|71443280|gb|DR824330.1|DR824330
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCNAGCCCGGCGGCTGGAACG ACCCTGACATGCEST: gi|87156914|gb|DY401703.1|DY401703
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGC
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|71318127|gb|DR795825.1|DR795825
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCEST: gi|87157241|gb|DY402030.1|DY402030
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGC
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|23199550|gb|BU582115.1|BU582115
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGEST: gi|78110547|gb|DV528957.1|DV528957
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: GACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCCGGCGGCTGGAACG ACCCTGACATGCTGEST: gi|148973153|gb|EE024223.2|EE024223
genomic: GACCTGAACGACGCCTACGCCCGGTACGCCAAGCCC-GGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTG
EST: CGACCTGAACGACGCCTACGCCCCGTACGCCCAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTEST: gi|78088430|gb|DV516823.1|DV516823
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGT
EST: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattccttcgtccacgtctcctcgtcatcctcatcctctctgccgctatagcttattatgccgcttcctggacggacctgaacgatggcctgctttgcttctctgccgcagcag
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