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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACTCCGGGATGTGTTCCGGTGGTCCCGCTGTAAGAAGGCCATGCCTGAAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAGgtattttctactttgtcggtgatgagacttgaagtctcctgtagacaagaacatgactgacattggcatttgctacctctgacaatgatgcag

Basic information

species Zea mays
transcript GRMZM2G146118_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146118_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os07g29450.1 (Oryza sativa), 5'ss of exon 11
TGAACTCCGGGATGTGTTCCGGTGGTCCCGCTGTAAGAAGGCCATGCCTGAAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAGgtattttctactttgtcggtgatgagacttgaagtctcctgtagacaagaac-atga--ctgacattggcat-ttgctacctctgacaatgatgcag
|||||| |||||| ||||||| |||||||||||||||||||| |||||||| ||  | |||||||||||||||||||| || ||||| || ||  | ||||||   ||    ||        | | |       |     | | |||  ||| |  |  || |||  |   | ||| |||||| |||    | ||||
TGAACTGCGGGATTTGTTCCGATGGTCCCGCTGTAAGAAGGCGATGCCTGAGAGCTCTATGCGCTCCATCGGTATCCCGCTGCCAGCTGATCAACTTGAGgtaacgtcctgctttctaacattaaaatggtggataattcgcatacagaaaccacaattctcacacggttttcttgttacctc-gacg-caacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397960|gb|DN230776.1|DN230776
EST:     AAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAG                         GTATTGCAGGATAACCTCGAATGGGAGGATGTGCAGTGGTCACAGACCGGT
genomic: AAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAGgtattttcta ... aatgatgcagGTATTGCAGGATAACCTCGAATGGGAGGATGTGCAGTGGTCACAGACCGGT
EST: gi|211090609|gb|FL307558.1|FL307558
EST:     AAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAG                         GTATTGCAGGATAACCTCGAATGGGAGGATGTGCAGTGGTCACAGACCGGT
genomic: AAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAGgtattttcta ... aatgatgcagGTATTGCAGGATAACCTCGAATGGGAGGATGTGCAGTGGTCACAGACCGGT
EST: gi|211531933|gb|FL453842.1|FL453842
EST:     AAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAG                         GTATTGCAGGATAACCTCGAATGGGAGGATGTGCAGTGGTCACAGACCGGT
genomic: AAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAGgtattttcta ... aatgatgcagGTATTGCAGGATAACCTCGAATGGGAGGATGTGCAGTGGTCACAGACCGGT
EST: gi|91053781|gb|EB164199.1|EB164199
EST:     AAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAG                         GTATTGCAGGATAACCTCGAATGGGAGGATGTGCAGTGGTCACAGACCGGT
genomic: AAAGTGCCATGCGCTCCATCGGTATCCCACTACCAGCAGACCAGTTAGAGgtattttcta ... aatgatgcagGTATTGCAGGATAACCTCGAATGGGAGGATGTGCAGTGGTCACAGACCGGT