1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CATGCGTTGGCTCCAGAAGCATCTGACCCTCAACATTCATGGCTGGACTGCAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAGgttggttcgccctgcatgtaacattcattttcttgctaacttatctagcttcctgagacctgaatccatggacatgttttgtccatgccccatccgaaaaaattgcag
species | Zea mays |
transcript | GRMZM2G141873_T06 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAG GTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGGEST: gi|211526768|gb|FL028557.1|FL028557
genomic: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAGgttggttcgc ... aaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG
EST: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAG GTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGGEST: gi|71423226|gb|DR805987.1|DR805987
genomic: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAGgttggttcgc ... aaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG
EST: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAG GTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGGEST: gi|71417999|gb|DR804277.1|DR804277
genomic: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAGgttggttcgc ... aaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG
EST: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAG GTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGGEST: gi|78087078|gb|DV515471.1|DV515471
genomic: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAGgttggttcgc ... aaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG
EST: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAG GTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG
genomic: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAGgttggttcgc ... aaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCGTTGGCTCCAGAAGCATCTGACCCTCAACATTCATGGCTGGACTGCAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAGgttggttcgccctgcatgtaacattcattttcttgctaacttatctagcttcctgagacctgaatccatggacatgttttgtccatgccccatccgaaaaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG