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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGGCTGGGGATTTTATATCAACTCGTGCTTTGTTCATTGTCAGTCGCTGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAGgtactgtaacagtcgtatacgaacttggtgagaacgatcttatctcgaacttttgatctcattttctgggatacttcttctgccattccaatcttagtattttctctctctatatatatatatctttcggtgaacag

Basic information

species Zea mays
transcript GRMZM2G141873_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141873_T07 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g02120.1 (Oryza sativa), 5'ss of exon 11
AAGGGGCTGGGGATTTTATATCAACTCGTGCTTTGTTCATTGTCAGTCGCTGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAGgtactg---taacagtcgtatacgaacttggtgagaacgatcttatctcgaacttttgatctcattttctgggatacttcttctgccattccaatcttagtattttctctctctatatatatatatctttcggtgaacag
|| || |||||| |||| |||| |||| |||||| | || ||||||||| ||||||| ||||||||||| |||||| |||| |  ||||||||||| |||||| ||   | |   ||  | | |||    |  ||||  |   | |||  |  |   |    |||| | |   ||      |   | | |   |  ||||                                        
AAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTCAACAACAAGgtaatgctttcatcctctaaaaagaaaacagaaagaaaaaaaatgtctacagttcaaggaa-cattatatattatgtcaaattgacaaattgtaggttagc---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149011848|gb|EE042455.2|EE042455
EST:     TGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAG                         AGCATTGCAGAAGCAGTTGGAGACTGGTTCTTTGACAGAAGAGAGGTGAAG
genomic: TGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAGgtactgtaac ... cggtgaacagAGCATTGCAGAAGCAGTTGGAGACTGGTTCTTTGACAGAAGAGAGGTGAAG
EST: gi|71423226|gb|DR805987.1|DR805987
EST:     TGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAG                         AGCATTGCAGAAGCAGTTGGAGACTGGTTCTTTGACAGAAGAGAGGTGAAG
genomic: TGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAGgtactgtaac ... cggtgaacagAGCATTGCAGAAGCAGTTGGAGACTGGTTCTTTGACAGAAGAGAGGTGAAG
EST: gi|71417999|gb|DR804277.1|DR804277
EST:     TGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAG                         AGCATTGCAGAAGCAGTTGGAGACTGGTTCTTTGACAGAAGAGAGGTGAAG
genomic: TGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAGgtactgtaac ... cggtgaacagAGCATTGCAGAAGCAGTTGGAGACTGGTTCTTTGACAGAAGAGAGGTGAAG
EST: gi|78087078|gb|DV515471.1|DV515471
EST:     TGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAG                         AGCATTGCAGAAGCAGTTGGAGACTGGTTCTTTGACAGAAGAGAGGTGAAG
genomic: TGAACTCGTTGACTTGGCACTCTCCAACTTCCCCCAGAGTCAACAATAAGgtactgtaac ... cggtgaacagAGCATTGCAGAAGCAGTTGGAGACTGGTTCTTTGACAGAAGAGAGGTGAAG