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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGAAACGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGAAAAACTATCCAATCTGTATCCATGCTTGGCTTCCTTCATgtaattatttctcattgtatttgcttgtcatcattacgatgaataaaattgtcttttaacattaatatctgacacatctgttgtag

Basic information

species Zea mays
transcript GRMZM2G141258_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141258_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 11
GTGGAGAAACGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGAAAAACTATCCAATCTGTATCCATGCTTGGCTTCCTTCATgta-attatttctcattgtatttgcttgtcatcattacgatgaataaaattgtcttttaacattaatatctgacacatctgttgtag
 |||||||| ||||| ||||| ||  | |||||||||||||| || ||||||||| | || || ||||| |||||||| || || || ||| | ||| |||  |||  |   |||| | |          |||  |||  |   |   | ||  |  ||  ||||          
TTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGgtatagtatctctatttgattacacttgcccttgc-------aatgtaataatacatgcgcttttgttccttgcacag---------

upper sequence: GRMZM2G141258_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
GTGGAGAAACGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGAAAAACTATCCAATCTGTATCCATGCTTGGCTTCCTTCATgtaattatttctca-ttgtatttgct--tgtcatcattacgatgaataaaattgtcttttaacattaatatc--tgacacatctgttgtag-------------------------------------------------------------------
 |||||||| ||||||||||||||  | ||||||||||||||||| || |||||| | || || || || |||||||| ||  | || ||||  || |   | || |  ||  |  | | || ||| |  |       ||| || ||||   ||| | |   || ||    | || |                                                                     
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttattgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag

upper sequence: GRMZM2G141258_T01 (Zea mays), 5'ss of exon 11
lower sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 12
GTGGAGAAACGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGAAAAACTATCCAATCTGTATCCATGCTTGGCTTCCTTCA--Tgtaattatttctcattgtatttgct-tgtcatcattacgatgaataaaattgtctttta-acattaatatctg-acacatctgt---tgtag------
 ||||||||||| || |||||||| ||||| |||||||||||||| || || ||  | || || || || |||||||| || |||||  |||     || |  | ||   |  || | ||    |  |  |   |     | |||   | |||   | |     |||||  |||   | |||      
TTGGAGAAACGACACCAATGTTATTCTTGCGGATGAAATGGGTCTTGGCAAGACGGTTCAGTCAGTGTCGATGCTTGGATTTCTTCAGgtgtggaccttacctactgctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacaaatgtatatatagcacact