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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGCAAGAACTGGGGTTGATTGGATTGCGTATCCAAAGAATGCCTAGTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttcccatccattacagtgttgcattaagataatttgggaatataatgaaaagagcgttctgattgaaaatggcacggagattcagagaggctgtgttgattgatgacagtcattgttttttgatgtttcag

Basic information

species Zea mays
transcript GRMZM2G136803_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136803_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os07g46790.1 (Oryza sativa), 5'ss of exon 20
GTTATGCAAGAACTGGGGTTGATTGGATTGCGTATCCAAAGAATGCCTAGTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttcccatcca--ttacagtgttgcattaagataatt--tgggaatataatgaaaagagcgttctgattgaaaatggcacggagattcagagaggctgtgttgattgatgacagtcattgttttttgatgttt-cag
|||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || | |   ||||   | | || || | | |||  |    ||  |   | |     ||| |   ||  ||    |    | ||  |||| ||| |   | ||||||       |||| |  |  | ||| |||
GTTATGCAAGAACTTGGATTGATTGGATTGCGTATCCAGAGAATGCCCAGTGAACCAAACTTGGAATTTGGTATTCCATCTCAGTATAGCTACATGACGgtgcgtttcccttctgtttacttgggttcaatatgttcattgctacagatgcacacatacttaggttgtatatggcaaactaaaaatggtttggagaagctattcagtttgatgttcaattttgtgtcatatttttttcag

upper sequence: GRMZM2G136803_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA19G30580.1 (Glycine max), 5'ss of exon 21
GTTATGCAAGAACTGGGGTTGATTGGATTGCGTATCCAAAGAATGCCTAGTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttcccatccattacagtgttgcattaagataatttgggaatataatgaaaagagcgttctgattgaaaatggcacggagattcagagaggctgtgttgattgatgacagtcattgttttttgatgtttcag
||||||||||||||||| ||  |||| ||||| || ||  | ||||| | ||||||  |  |||||||||||||||||||| |||| ||||| ||||||||  | |    | |  |    | |||| |        |||    || | ||  |     ||||  | |||||      | ||| |   |  ||   | | |   || ||                           
GTTATGCAAGAACTGGGATTAGTTGGGTTGCGCATTCAGCGCATGCCCAATGAACCTGATCTGGAATTTGGTATTCCTTCTAAGTACAGCTACATGACGgtaaggt----ttctatgttctattgcttctcctccttttccttattttatttaggtgccgtt--ggttgaact---aatggaaacatattgactttttatatttttat---------------------------

upper sequence: GRMZM2G136803_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA03G27600.1 (Glycine max), 5'ss of exon 20
GTTATGCAAGAACTGGGGTTGATTGGATTGCGTATCCAAAGAATGCCTAGTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcg-ttcccatccattacagtgttgcattaagataatttgggaatataatgaaaagagcgttctgattgaaaatggcacggagattcagagaggctgtgttgattgatgacagtcattgttttttgatgtttcag
||||||||||||||||| ||  |||| ||||| || ||  | ||||| | ||||||  |  |||||||||||||||||||| |||| ||||| ||||||||  | || | ||    ||  |  |  | ||    | ||||     |||   |        | | | | | |      ||    ||||        |||| || |||||                            
GTTATGCAAGAACTGGGATTAGTTGGGTTGCGCATTCAGCGCATGCCCAATGAACCTGATCTGGAATTTGGTATTCCTTCTAAGTACAGCTACATGACGgtaaggtttcaatgtgctattgcttgtccttttccttattt-----tatttaggtgttgttggtttaactaatggaaacatattgatttttt----ctgtttttattga----------------------------

upper sequence: GRMZM2G136803_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv08s0040g00670.t01 (Vitis vinifera), 5'ss of exon 19
GTTATGCAAGAACTGGGGTTGATTGGATTGCGTATCCAAAGAATGCCTAGTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttcccatccattacagtgttgcattaagataatttgggaatataatgaaaagagcgttctgattgaaaatggcacggagattcagagaggctgtgttgattgatgacagtcattgttttttgatgtttcag
|| |||||||||||||| || ||||| || || || ||||| ||||| ||||||||     |||| ||||||||||||||||| |||||||||||||||||  | ||| ||      || | ||||  ||    | ||| ||  | |  |   | |     |    ||| |  |  |  | |  |  |  ||  |  | ||||||  |                           
GTCATGCAAGAACTGGGTTTAATTGGTTTACGCATTCAAAGGATGCCAAGTGAACCTGGGCTGGAGTTTGGTATTCCTTCTCAATATAGCTATATGACGgtaagatcctat-----gcaatattgctctact-catttttggcctgttctattaggg----tgcatttggatgtcccgtgaaagtggaaggatcccat-ttgattagtag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32932784|gb|CF037596.1|CF037596
EST:     GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACG                         GTTTGTGCTCCCTCATGTCATGACTGCTCTACATTACGTGCTTGGTGGGAA
genomic: GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttccc ... gatgtttcagGTTTGTGCTCCCTCATGTCATGACTGCTCTACATTACGTGCTTGGTGGGAA
EST: gi|32930716|gb|CF035528.1|CF035528
EST:     GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACG                         GTTTGTGCTCCCTCATGTCATGACTGCTTTACATTACGTGCTTGGTGGGAA
genomic: GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttccc ... gatgtttcagGTTTGTGCTCCCTCATGTCATGACTGCTCTACATTACGTGCTTGGTGGGAA
EST: gi|16927586|gb|BM080655.1|BM080655
EST:     TGGTATTCCTTCTCAGTATAGCTATATGACG                         GTTTGTGCTCCCTCATGTCATGACTGCTCTACATTACGTGCTTGGTGGGAA
genomic: TGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttccc ... gatgtttcagGTTTGTGCTCCCTCATGTCATGACTGCTCTACATTACGTGCTTGGTGGGAA
EST: gi|32867796|gb|CF007478.1|CF007478
EST:     AACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACG                         GTTTGTGCTCCCTCATGTCATGACTGCTCTACATTACGTGCTTGGTGGGAA
genomic: AACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttccc ... gatgtttcagGTTTGTGCTCCCTCATGTCATGACTGCTCTACATTACGTGCTTGGTGGGAA
EST: gi|32836690|gb|CD976368.1|CD976368
EST:     TTATGCAAGAACTGGGGTTGATTGGATTGCGTATCCAAAGAATGCCTAGTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACG
genomic: GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttccc ... gatgtttcagGTTTGTGCTCCCTCATGTCATGA
EST: gi|32932809|gb|CF037621.1|CF037621
EST:     GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACG                         GTTTGTGCTCCCTCATGTCATGACTGCTCTACATTACGTGCTTGGTGGGAA
genomic: GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttccc ... gatgtttcagGTTTGTGCTCCCTCATGTCATGACTGCTCTACATTACGTGCTTGGTGGGAA
EST: gi|32932023|gb|CF036835.1|CF036835
EST:     TTATGCAAGAACTGGGGTTGATTGGATTGCGTATCCAAAGAATGCCTAGTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACG
genomic: GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttccc ... gatgtttcagGTTTGTGCTCCCTCATGTCATGA
EST: gi|32931864|gb|CF036676.1|CF036676
EST:     TTATGCAAGAACTGGGGTTGATTGGATTGCGTATCCAAAGAATGCCTAGTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACG
genomic: GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttccc ... gatgtttcagGTTTGTGCTCCCTCATGTCATGA
EST: gi|32837361|gb|CD977039.1|CD977039
EST:     ATCCAAAGAATGCCTAGTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACG          
genomic: GTGAACCAAACTTGGAATTTGGTATTCCTTCTCAGTATAGCTATATGACGgtgcgttccc ... gatgtttcagG