Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCTATTTATGGGAGGAAGAAAAGCGAATGGGACCAAATGGCAAGTTGGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAGgttgatagccctgtcccccttcttttgttcaagtgtgttcaataaccaaatgtgaaactctggctagcccacaatgtaacaagagtataatttctgtgctttattatttgtttcattttttgtcttcag

Basic information

species Zea mays
transcript GRMZM2G134396_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134396_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 12
GATATCTATTTATGGGAGGAAGAAAAGCGAATGGGACCAAATGGCAAGTTGGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAGgtt---------------gatagccctgtcccccttc--------ttttgttcaagtgtgttcaataacca---aatgtgaaactctggctagcccacaatgtaacaag--agtataatttctgtgctttattatttgtttcattttttgtcttcag-----------------------------------
 |||||||| |||||||| |||||||| || ||||| || |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||               |||  |   |||  | |          |||| |   ||| | ||   ||| ||   | |    || |||           ||   |||||   |||||| | | ||    | | |||||  ||  | ||||| |                                        
AATATCTATCTATGGGAGAAAGAAAAGTGAGTGGGATCAGATGGCAAGCTGGATAGTGAATAATGAATTGTACAGCGAGAATGTTGTTTGGTTAATTCAGgttatgacactctctgttgatgtcgtcgtctgcttctagtcataattttatctgagttttttttctaaacattcagtaatcaattcttaaactttgtaaaccaaacaaactagtatactctgtgcaggtaactattttatttttattttgccagagtagatttactgaaacattgtttaattttatctgcag

upper sequence: GRMZM2G134396_T03 (Zea mays), 5'ss of exon 11
lower sequence: PP1S168_82V6.1 (Physcomitrella patens), 5'ss of exon 11
GATATCTATTTATGGGAGGAAGAAAAGCGAATGGGACCAAATGGCAAGTTGGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAGgttgatagccctgtcccccttcttttgttcaagtgtgttcaataaccaaatgtgaaactctggctagcccacaatgtaacaagagtataatttctgtgctttattatttgtttcattttttgtcttcag
|||||| ||||| || |||||||| ||||| ||||| ||  ||||||||||||||||  |||||    | || || || || ||   |||| | || ||||||  |     | |     | ||| |    ||   | ||         |   |   | | ||   |    |     | |  ||   || |||||  |   |  || |                      
GATATCAATTTACGGAAGGAAGAAGAGCGAGTGGGATCAGTTGGCAAGTTGGATAGTTGACAATCGGCTGTACAGTGAAAACGTCACTTGGCTTATCCAGgttcttt-taatttgtttgtccttatacgaaacattatttgg-----gagcattttattgtgataaagggattgactgaggagga-atgatttcaatatatagttgt----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21987227|gb|BQ778755.1|BQ778755
EST:     GGATAGTGAACAATGAATTATATAGCGAGAATGTTGTCTGGTTAATTCAG                         ATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
genomic: GGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAGgttgatagcc ... ttgtcttcagATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
EST: gi|26557914|gb|CA830149.1|CA830149
EST:     GATAG-GAACAATGAATTATATAGCGAGAATGTTGTCTTGGTTAATTCAG                         ATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
genomic: GATAGTGAACAATGAATTATATAGCGAGAATGTTGT-TTGGTTAATTCAGgttgatagcc ... ttgtcttcagATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
EST: gi|74237693|gb|DT645607.1|DT645607
EST:     GGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAG                         ATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
genomic: GGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAGgttgatagcc ... ttgtcttcagATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
EST: gi|71299098|gb|DR785546.1|DR785546
EST:     GGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAG                         ATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
genomic: GGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAGgttgatagcc ... ttgtcttcagATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
EST: gi|32835884|gb|CD975562.1|CD975562
EST:     GGATAGTGACCAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAG                         ATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
genomic: GGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAGgttgatagcc ... ttgtcttcagATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
EST: gi|32863100|gb|CF002782.1|CF002782
EST:     GGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAG                         ATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC
genomic: GGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATTCAGgttgatagcc ... ttgtcttcagATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTC