Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTGAGGTTGTGGCTGATCCGCAAGGGGATGTGGCTAATACATTTCAGAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAGgtaaatagactgaaagtagttcatggaagatgacctcatatacggacacaaaaaataataagaaagcaccaaataagttgtgcaacacacgttctggatacacatacataatacagaaaaagagacgcttttcttataaattgttatttttctgttgtcag

Basic information

species Zea mays
transcript GRMZM2G129208_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129208_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g52170.1 (Oryza sativa), 5'ss of exon 12
ATTCCTGAGGTTGTGGCTGATCCGCAAGGGGATGTGGCTAATACATTTCAGAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAGgtaaatagactgaaagtagttcatggaagatgacctcatatacggacacaaaaaataataagaaagcaccaaataagttgtgcaacacacgttctggatacacatacataatacagaaaaagagacgcttttcttataaattgttatttttctgttgtcag
|||||||| || ||||||||||| ||||||||||| ||||| || |||||||||||||| |  ||||||||||| ||||||||||||||||| ||||| ||||| |        || ||||||   |  |  ||||   ||| | |     ||| || |    |     ||| | | ||         |  |||    ||  || |  | | ||| ||                                           
ATTCCTGAAGTAGTGGCTGATCCACAAGGGGATGTTGCTAAGACGTTTCAGAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGGgtaagtt-------agcagttcacaaattacaacctagaatatgta-----aaagtagttcata-----caatttattttcttggtgaa--ttcgaactaaccaaaatttaaacaaaac------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32921765|gb|CF026577.1|CF026577
EST:     GAATCTTGGGGCATGTGTTGCTCAACAGTGTGCTAAAATCAGGCAACAAG                         TTTCTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAG
genomic: GAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAGgtaaatagac ... ctgttgtcagTTTCTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAG
EST: gi|60400398|gb|DN233205.1|DN233205
EST:     GAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAG                         TTTCTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAG
genomic: GAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAGgtaaatagac ... ctgttgtcagTTTCTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAG
EST: gi|32920197|gb|CF025009.1|CF025009
EST:     GAATCTTGGGGCACGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAG                         TTTCTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAG
genomic: GAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAGgtaaatagac ... ctgttgtcagTTTCTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAG
EST: gi|32921998|gb|CF026810.1|CF026810
EST:     GAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAG                         TTTCTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAG
genomic: GAATCTTGGGGCATGTGTTGTTCAACAGTGTGCTAAAATCAGGCAACAAGgtaaatagac ... ctgttgtcagTTTCTACAGCGGTGTCCTACGATAGATCCATTAAAGCAATCAGAGTGAAAG