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GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcctgaattgtgtaaaacctgtttgcacatttattatctctagaagtttcatgcaaaatatggagaataataaaggaaatataaaggttgttga...
species | Zea mays |
transcript | GRMZM2G128877_T03 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|60338201|gb|DN205174.1|DN205174
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: GGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|13149764|gb|BG320086.1|BG320086
genomic: GGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|32831320|gb|CD970998.1|CD970998
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|32928400|gb|CF033212.1|CF033212
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|32837774|gb|CD977452.1|CD977452
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: CCCATCTGTGAATTGGCTCATTTCCTATTCCAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|74035379|gb|DT535868.1|DT535868
genomic: CCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|5296280|gb|AI783050.1|AI783050
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|5846764|gb|AI999847.1|AI999847
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|32939925|gb|CF044744.1|CF044744
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: ATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|211532168|gb|FL123442.1|FL123442
genomic: ATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|211154401|gb|FL123520.1|FL123520
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|5847131|gb|AW000210.1|AW000210
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|33092495|gb|CF052489.1|CF052489
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|5846817|gb|AI999900.1|AI999900
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGGGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|5846863|gb|AI999946.1|AI999946
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|67040096|gb|CO466351.1|CO466351
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: ATTTCCCATTTCTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|32836684|gb|CD976362.1|CD976362
genomic: ATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGATCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAAATTTCATTGATATTAGGEST: gi|5343199|gb|AI795384.1|AI795384
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|5296225|gb|AI782905.1|AI782905
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|5325051|gb|AI783242.1|AI783242
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGEST: gi|211156008|gb|FL123543.1|FL123543
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: GAAATACTCCAAG GCCCTTGAGTCCTTTTATGARAAGTTTGATCCARATTTCATTGATATTAGGEST: gi|67025855|gb|CO454604.1|CO454604
genomic: GAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
EST: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAG GCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
genomic: AGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcct ... tgccttgcagGCCCTTGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCTGTGAATTGGCTCATTTCCTATTCGAAATACTCCAAGgttatttcctgaattgtgtaaaacctgtttgcacatttattatctctagaagtttcatgcaaaatatggagaataataaaggaaatataaaggttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggaaa