1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTTCACACTTGATGGAGAACATGGTGTCTTGCGACACCTTGAGCATTTACTTAATACAAAGGGATTTTGTGTGGTTTGTGTTGCTGAAGGTGCAGGGCAGgtaagacagtgcagtagctaaacagtttatccttcttgactgcttctaatttcataggtgaatactgaatagtgaaaattagaaatgtatttttgtactcttggcacag
species | Zea mays |
transcript | GRMZM2G127717_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTAATACAAAGGGATTTTGTGTGGTTTGTGTTGCTGAAGGTGCAGGGCAG GATTTACTGCAAAAATCAAATGCAACTGACGCTTCAGGAAATGTGATACTTEST: gi|56382617|gb|CV985286.1|CV985286
genomic: TTAATACAAAGGGATTTTGTGTGGTTTGTGTTGCTGAAGGTGCAGGGCAGgtaagacagt ... cttggcacagGATTTACTGCAAAAATCAAATGCAACTGACGCTTCAGGAAATGTGATACTT
EST: TTAATACAAAGGGATTTTGTGTGGTTTGTGTTGTTGAAGGTGCAGGGCAG GATTTACTGCAAAAATCAAATGCAACTGACGCTTCAGGAAATGTGATACTTEST: gi|166551792|gb|EG159192.1|EG159192
genomic: TTAATACAAAGGGATTTTGTGTGGTTTGTGTTGCTGAAGGTGCAGGGCAGgtaagacagt ... cttggcacagGATTTACTGCAAAAATCAAATGCAACTGACGCTTCAGGAAATGTGATACTT
EST: TTAATACAAAGGGATTTTGTGTGGTTTGTGTTGCTGAAGGTGCAGGGCAG GATTTACTGCAAAAATCEST: gi|211225796|gb|FL287050.1|FL287050
genomic: TTAATACAAAGGGATTTTGTGTGGTTTGTGTTGCTGAAGGTGCAGGGCAGgtaagacagt ... cttggcacagGATTTACTGCAAAAATC
EST: TA-TACAAAGGGATTTTTGTGTGGTTTGTGNTGCTGAAGGTGCAGGGCAN GATTTACTGCAAAAATTCAA-TGCNACTGACGCTTCAGGAAATGTGGATAC
genomic: TAATACAAAGGGATTTT-GTGTGGTTTGTGTTGCTGAAGGTGCAGGGCAGgtaagacagt ... cttggcacagGATTTACTGCAAAAAT-CAAATGCAACTGACGCTTCAGGAAATGTG-ATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCACACTTGATGGAGAACATGGTGTCTTGCGACACCTTGAGCATTTACTTAATACAAAGGGATTTTGTGTGGTTTGTGTTGCTGAAGGTGCAGGGCAGgtaagacagtgcagtagctaaacagtttatccttcttgactgcttctaatttcataggtgaatactgaatagtgaaaattagaaatgtatttttgtactcttggcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG