Sequence
atgc intronic sequence ATGC exonic sequenceATCGCAGATGGTGATCGGTTACCATTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAAgtaagtttacctatgatagaatggatgcttcaattgtgatcttcatcatgactcaactaaatgcttgaaacttagttctattttctttttaatgtccaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 11
ATCGCAGATGGTGATCGGTTACCATTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAAgtaagtttacctatgata---gaatggatgcttcaattg-----tgatcttcatca--tgactcaactaaatgcttgaaacttagttctattttctttttaatgtccaaa
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ATTGCAGATGGTGAGCGCTTACCCTTGGTTGTGAAGGAGTTGGGAACCTGTGATCTTTATCCACAAgtaagttcatatttgctatttaaacgaatgcatcattcgcatattgatgttttccaatagaaccaacttgatgcttgcaaatgagtcccaagtttctttt----------
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 2
ATCGCAGATGGTGATCGGTTACCATTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAAgtaagtttac---ctatgatagaatggatgcttcaattgtgatcttcatcatgactcaactaaatgcttgaaacttagttctattttctttttaatgtccaaa
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ATTGCAGATGGTGAGCGCTTACCCTTAGCTGTGAAGGAGTTGGGAACCTGTGATCTTTATCCACAAgtatgttcatattttctatttaaatgaatgcatcattcgc-atagtgatcaag--tgatgttttccaccagaaccaacttgatgcttgcaaatgagtcccaaa
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 11
ATCGCAGATGGTGATCGGTTACCATTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAAgtaagtttacctatgatagaatggatgcttcaattgtgatcttcatcatgactcaactaaatgcttgaaacttagttctattttctttt--taatgtccaaa
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ATTGCTGATGGAGAAAGGCTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAgtgagtgaacatcccttttccttgatg-ttaagtcacattcttttgcattacttctctattttttttatcatttatgctcacatcatgtgatagggacttg-
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 11
ATCGCAGATGGTGATCGGTTACCATTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAAgtaagtttacctatgatagaatggatgcttcaattgtgatcttcatcatgactcaactaaatgcttgaaacttagttctattttctttt-taatgtccaaa-
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ATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCTCAAgtgagtgaacatcctttttccgtaata-ttaagtcacattcttttgcattacttctctatat-tttatcatttatgctcatattatgtgatagggacttagg
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 11
ATCGCAGATGGTGATCGGTTACCATTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAAgtaagtttac------ctatgatagaatggatgcttcaattgtgatcttcatcatgactcaactaaatgcttgaaacttagttctattttctttttaatgtccaaa
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GTTACTGATGGAGAAAGATTGCCTTTGGCTGTTAAGGAGTTAGGAACCTGTGATCTTTACCCACAAgtgagttgactgtcttctggcattatttaattttttctatggtgctttatttcattattttgct--ttgctttgg-tgtggtttcatgtcctttgctcccacc---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31355222|gb|CD439579.1|CD439579EST: GGTTACTTTTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAA AGCTTAAGACACAATCCGAATGGGAGATTTGTTGTTGTATGTGGAGATGGA
genomic: GGTTACCATTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAAgtaagtttac ... tttgtttcagAGCTTAAGACACAATCCGAATGGGAGATTTGTTGTTGTATGTGGAGATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCGCAGATGGTGATCGGTTACCATTGGCCGTGAAGGAGTTGGGAAGCTGTGATCTTTATCCACAAgtaagtttacctatgatagaatggatgcttcaattgtgatcttcatcatgactcaactaaatgcttgaaacttagttctattttctttttaatgtccaaa
- - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - AAGCTG