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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCTCTTTGGATGATTAGTGCGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattcctcctgctcccatctctaaactcactccagttccatatgggggcttggcaaaatagtgaaataaagcagtctgtttagctttctacaaagataaatcaccccgctactgccccttgcag

Basic information

species Zea mays
transcript GRMZM2G120517_T02
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4887369|gb|AI677468.1|AI677468
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|7162396|gb|AW520018.1|AW520018
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|60342201|gb|DN209174.1|DN209174
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|24934386|gb|CA452604.1|CA452604
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGT
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGT
EST: gi|71327463|gb|DR800349.1|DR800349
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|67022725|gb|CO451474.1|CO451474
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|7216381|gb|AW562503.1|AW562503
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|101393103|gb|EB818482.1|EB818482
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTTTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|60397958|gb|DN230774.1|DN230774
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|74246091|gb|DT654005.1|DT654005
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|7204636|gb|AW559169.1|AW559169
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|60349847|gb|DN216820.1|DN216820
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|5740004|gb|AI947694.1|AI947694
EST:     CGGCCCCAGAACCNCAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|76920121|gb|DV168019.1|DV168019
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|166502236|gb|EG039406.1|EG039406
EST:     GTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: GTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|76292512|gb|DV032080.1|DV032080
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|211216297|gb|FL460273.1|FL460273
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|7216380|gb|AW562502.1|AW562502
EST:     TGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: TGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|60342528|gb|DN209501.1|DN209501
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|71759931|gb|DR957868.1|DR957868
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA
EST: gi|14244899|gb|BG842837.2|BG842837
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTAATCATATCATCGTACAAG
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTC-TCATATCATCGTACAAG
EST: gi|88753851|gb|DY537992.1|DY537992
EST:     CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAG                         GATCAAGAGGGAGCATACAATTCATTGTTCTTTTCATATCATCGTACAAGA
genomic: CGGCACCAGAACCACAGTCCGTGAAACAGGAAAACCCTGTCCTTGAAAAGgtgtatattc ... ccccttgcagGATCAAGAGGGAGCATACAATTCATTGTTCTTCTCATATCATCGTACAAGA