Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCTGGCCAGAAAGCTTATGCCTATTTCTACCCACCATCAAATCCCAATTTTCAAGGTTTGCCTGATGAAAAGCCTCCTTTGCTTGTCAAAACACATGgtaagtgaattattcaaaccttatgttgcttgaaataattattcggtttgatccccctcaaaagaactatacatgtattcagcttaagtgttctcttagattttacaaaaataaatgatttttgctaagtaggtttgaaattctttcttttcagatgaaaatcacagaatgctttgacactctaaattttcag

Basic information

species Zea mays
transcript GRMZM2G120302_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120302_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os06g11180.1 (Oryza sativa), 5'ss of exon 11
AAGTCTGGCCAGAAAGCTTATGCCTATTTCTACCCACCATCAAATCCCAATTTTCAAGGTTTGCCTGATGAAAAGCCTCCTTTGCTTGTCAAAACACATGgtaagtgaattattcaaaccttatgttgctt-gaaataattattcggtttgatccccctcaaaagaactatacatgtattcag-cttaagtgttctcttagattttacaaaaataaatgatttttgctaagtaggtttgaaattctttcttttcagatgaaaatcacagaatgctttgacactctaaattttcag
|   | ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||| || |||| || ||| |   ||||  | |   ||||||||||    |||| || ||| ||  |||| || |  || |||| | |    ||                                                                                           
AGCACCGGCCAGAAAGCTTATGCATATTTCTACCCACCTTCAAACCCAAATTTTCAAGGTTTGCCAGACGAAAAACCTCCATTGCTTGTCAAAACACATGgtaagtaaattattgaagccttgtgatgcctcagaatatctttgtagtttgatcccag--aaaataattattcagttatttaggcccaactgttatgt---gttc------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931835|gb|CF036647.1|CF036647
EST:     TTTTCAAGGTTTGCCCGATGAAAAGCCTCCTTTGCTTGTCAAAACACATG                         GAGGACCAACTGCTGAAACACGTGCAATTCTGGACCTCAGTGTCCAGTATT
genomic: TTTTCAAGGTTTGCCTGATGAAAAGCCTCCTTTGCTTGTCAAAACACATGgtaagtgaat ... aaattttcagGAGGACCAACTGCTGAAACACGTGCAATTCTGGACCTCAGTGTCCAGTATT
EST: gi|211313026|gb|FL032573.1|FL032573
EST:     TTTTCAAGGTTTGCCTGATGAAAAGCCTCCTTTGCTTGTCAAAACACATG                         GAGGACCAACTGCTGAAACACGTGCAATTCTGGACCTCAGTGTCCAGTATT
genomic: TTTTCAAGGTTTGCCTGATGAAAAGCCTCCTTTGCTTGTCAAAACACATGgtaagtgaat ... aaattttcagGAGGACCAACTGCTGAAACACGTGCAATTCTGGACCTCAGTGTCCAGTATT
EST: gi|166449944|gb|EG144966.1|EG144966
EST:     TTCTAAGGTTTGCCTGATGAAAAGACCTCCTTTGCTTGTCAAAACACATG                         GAGGACCAACTGCTGAAACACGTGCAATTCTGGACC
genomic: TTC-AAGGTTTGCCTGATGAAAAG-CCTCCTTTGCTTGTCAAAACACATGgtaagtgaat ... aaattttcagGAGGACCAACTGCTGAAACACGTGCAATTCTGGACC