Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATCCAGGCCAACACCTTCGCTTTCGGAGTGATTTTACTGGAGATCATCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgatcgtcatcttggacctgaagcagctataaaatgtctgtcgctgaagcttctttgtgcatgcag

Basic information

species Zea mays
transcript GRMZM2G119759_T06
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119759_T04 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os04g58700.1 (Oryza sativa), 5'ss of exon 12
TGATATCCAGGCCAACACCTTCGCTTTCGGAGTGATTTTACTGGAGATCATCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgatcg--tcatcttggacctgaa-gcagctataaaatgtctgtcgctgaagct--tctttgtgcatgcag-----------------------
 || ||||| | ||| || || ||||| ||||||||||| |||||||||||||| || |||||||| || |||||||| |||||||||||| | ||||||||||| |  ||   || |  |  | || |  |   | |  || |   | |    |||  |     |   |  |||                         
AGACATCCAAGGCAATACATTTGCTTTTGGAGTGATTTTGCTGGAGATCATCAGTGGACGGCTTCCTTATTGCAAGGACAAAGGCTATTTGATTGACTGGgtgaggcattctactctttctctatctcattgtgacaaagaagtaaatattttagaaattgactctgaagtctgctcaagaggaccagagcctagttcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45846935|gb|CN070878.1|CN070878
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149107663|gb|EE189542.2|EE189542
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|91050218|gb|EB160636.1|EB160636
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|60345284|gb|DN212257.1|DN212257
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|88746982|gb|DY531123.1|DY531123
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|71770668|gb|DR968605.1|DR968605
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|71313398|gb|DR793250.1|DR793250
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149097230|gb|EE183048.2|EE183048
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149051626|gb|EE155736.2|EE155736
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|78089519|gb|DV517893.1|DV517893
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|148950050|gb|EC895582.2|EC895582
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|50334832|gb|CO529958.1|CO529958
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|71761155|gb|DR959092.1|DR959092
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|88757283|gb|DY541424.1|DY541424
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|60356012|gb|DN222985.1|DN222985
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|71330749|gb|DR802161.1|DR802161
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149106783|gb|EE188679.2|EE188679
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|101388114|gb|EB816071.1|EB816071
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149013195|gb|EE042830.2|EE042830
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|166645174|gb|EG146810.1|EG146810
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTAACCTCC
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTA-CCTCC
EST: gi|149097302|gb|EE183131.2|EE183131
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|78122547|gb|DV540931.1|DV540931
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|50335669|gb|CO530795.1|CO530795
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|44901335|gb|CK827880.1|CK827880
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|148943639|gb|EC888703.2|EC888703
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|78084470|gb|DV512863.1|DV512863
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149102188|gb|EE188116.2|EE188116
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|40334564|gb|CK368634.1|CK368634
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149004762|gb|EE039259.2|EE039259
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|86472200|gb|DY238570.1|DY238570
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149095721|gb|EE181354.2|EE181354
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|76910133|gb|DV163719.1|DV163719
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|148975399|gb|EE025699.2|EE025699
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|74242567|gb|DT650481.1|DT650481
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149031687|gb|EE154870.2|EE154870
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149074933|gb|EE163389.2|EE163389
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|94474040|gb|EB702998.1|EB702998
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|110963269|gb|EE183169.1|EE183169
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|18650219|gb|BM499038.1|BM499038
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149089831|gb|EE179109.2|EE179109
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|71760111|gb|DR958048.1|DR958048
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|149111973|gb|EE191133.2|EE191133
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|148999085|gb|EE024226.2|EE024226
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|91875214|gb|EB405171.1|EB405171
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 30 (upstream exon), 20 (downstream exon)
Score: 2

TGATATCCAGGCCAACACCTTCGCTTTCGGAGTGATTTTACTGGAGATCATCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCGGAGCTGGGCAGCGTGCGGAGCGAGGACCTGGCGGTGCTGTGCAGCGTGG


Block sizes: 30 (upstream exon), 39 (downstream exon)
Score: 10

TGATATCCAGGCCAACACCTTCGCTTTCGGAGTGATTTTACTGGAGATCATCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCGGAGCTGGGCAGCGTGCGGAGCGAGGACCTGGCGGTGCTGTGCAGCGTGG


Block sizes: 29 (upstream exon), 21 (downstream exon)
Score: 1

TGATATCCAGGCCAACACCTTCGCTTTCGGAGTGATTTTACTGGAGATCATCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCGGAGCTGGGCAGCGTGCGGAGCGAGGACCTGGCGGTGCTGTGCAGCGTGG