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ATATACATGCAGAAGGGTATATTTACTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagttttctgtttcaaaatagcatattcttgttaattttgttatttttctgacgttacattccacagtaagttgaagataagatccaattaatcaat...
species | Zea mays |
transcript | GRMZM2G118316_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAEST: gi|149101261|gb|EE187373.2|EE187373
genomic: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCA
EST: GGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|78088193|gb|DV516586.1|DV516586
genomic: GGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCCAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|71757145|gb|DR955082.1|DR955082
genomic: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCCAGACTTGCAAAGGEST: gi|86469547|gb|DY235917.1|DY235917
genomic: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGG
EST: AAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|60398827|gb|DN231643.1|DN231643
genomic: AAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|91049687|gb|EB160105.1|EB160105
genomic: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGACCAGGTAGTGAAAGGGAAAACGTCAEST: gi|211267317|gb|FL091731.1|FL091731
genomic: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|34391167|gb|CF384395.1|CF384395
genomic: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|71427930|gb|DR808980.1|DR808980
genomic: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|37397730|gb|CF636173.1|CF636173
genomic: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: AAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|32847340|gb|CD987021.1|CD987021
genomic: AAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: ACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|67040336|gb|CO466591.1|CO466591
genomic: ACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCAEST: gi|40337178|gb|CK371248.1|CK371248
genomic: CTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
EST: GGGAAAATTGTCAAG AGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
genomic: GGGAAAATTGTCAAGgtgcagtttt ... tgatttgtagAGTTTTTGCAAGACTTGCAAAGGAGAACAGGTAGTGAAGGGGAAAACGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATACATGCAGAAGGGTATATTTACTGTCGAATGTACTTGCTCCCTGTGCAATGGGAGCGGGAAAATTGTCAAGgtgcagttttctgtttcaaaatagcatattcttgttaattttgttatttttctgacgttacattccacagtaagttgaagataagatccaattaatcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagataa