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ACCAGGAAATGATCAAAAAGGGATAATACCTCGTTCTTTGGAGCAAATTTTCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAAgttagtatctcaaagctatttagcttcttaactgttgttttattttatgttattgctaatttggtaaagacatatttggttcgttgtgcag
species | Zea mays |
transcript | GRMZM2G114861_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAA GCATCAATGTTGGAAATATACAATGAGACCATTCGTGATTTGTTAGCACCTEST: gi|87155658|gb|DY400447.1|DY400447
genomic: TCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAAgttagtatct ... cgttgtgcagGCATCAATGTTGGAAATATACAATGAGACCATTCGTGATTTGTTAGCACCT
EST: TCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAA GCATCAATGTTGGAAATATACAATGAGACCATTCEST: gi|67014413|gb|CO443162.1|CO443162
genomic: TCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAAgttagtatct ... cgttgtgcagGCATCAATGTTGGAAATATACAATGAGACCATTC
EST: TCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAA GCATCAATGTTGGAAATATACAATGAGACCATTCGTGATTTGTTAGCACCTEST: gi|78085386|gb|DV513779.1|DV513779
genomic: TCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAAgttagtatct ... cgttgtgcagGCATCAATGTTGGAAATATACAATGAGACCATTCGTGATTTGTTAGCACCT
EST: TCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAA GCATCAATGTTGGAAATATACAATGAGACCATTCGTGATTTGTTAGCACCT
genomic: TCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAAgttagtatct ... cgttgtgcagGCATCAATGTTGGAAATATACAATGAGACCATTCGTGATTTGTTAGCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAGGAAATGATCAAAAAGGGATAATACCTCGTTCTTTGGAGCAAATTTTCAAGACCAGTCGGTTTCTAGAATCTCAAGGATGGAATTATTCCATGCAAgttagtatctcaaagctatttagcttcttaactgttgttttattttatgttattgctaatttggtaaagacatatttggttcgttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA