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GTTCTAGGCAAATGTCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTGgttggatttcttgctacatctatatattgtttactataatgttttacaaattaaggcattttggatggatcattgtcaaaccaaagggaaaaaataccgt...
species | Zea mays |
transcript | GRMZM2G111903_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTG TTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTTGTTEST: gi|32832589|gb|CD972267.1|CD972267
genomic: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTGgttggatttc ... cgttgtgtagTTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTTGTT
EST: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTG TTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTTGTTEST: gi|61236607|gb|DN586354.1|DN586354
genomic: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTGgttggatttc ... cgttgtgtagTTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTTGTT
EST: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTG TTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTTGTTEST: gi|76292142|gb|DV031710.1|DV031710
genomic: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTGgttggatttc ... cgttgtgtagTTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTTGTT
EST: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTG TTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTTGTTEST: gi|18964666|gb|BM661136.1|BM661136
genomic: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTGgttggatttc ... cgttgtgtagTTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTTGTT
EST: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTG TTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTGGTT
genomic: TCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTGgttggatttc ... cgttgtgtagTTGTGGAAGATGGTTCGAACTGGAGCATGGGTCAAAGGCAGCTCTTTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTAGGCAAATGTCAGCTTCTTGAAGCTGTCCAGGAGAAGGAGCAGGGATTGGACTCACTTGgttggatttcttgctacatctatatattgtttactataatgttttacaaattaaggcattttggatggatcattgtcaaaccaaagggaaaaaataccgt
- - - - - - - TCAGCT
- - - - - - - - - - - TTGAAG
- - - - - - - - - - - TGAAGC
- - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaata