1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaatatgccagaacatttgaaattgcagtatcaaacaagttagattaagattagttaggctctagaaagcaccaaatgtatgaactaatcctc...
species | Zea mays |
transcript | GRMZM2G111713_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|76923556|gb|DV169545.1|DV169545
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|4827723|gb|AI668415.1|AI668415
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|60340408|gb|DN207381.1|DN207381
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|50337822|gb|CO532948.1|CO532948
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|89251080|gb|DY622866.1|DY622866
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|37383724|gb|CF628889.1|CF628889
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|148938687|gb|EC883023.2|EC883023
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|18181535|gb|BM382745.1|BM382745
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|89248722|gb|DY620508.1|DY620508
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|71420007|gb|DR804974.1|DR804974
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGAEST: gi|211237149|gb|FL440871.1|FL440871
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
EST: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAG GTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
genomic: AAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaa ... tattctgtagGTACTTGTGAAAGACATTTGGGTGTTTGAGAGGTCCCTTTTTCACCCCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCGAAGGAGgtaaattaaatatgccagaacatttgaaattgcagtatcaaacaagttagattaagattagttaggctctagaaagcaccaaatgtatgaactaatcctc
- - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG