1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttgctcccaactcctctgcgtatatgtagcttgcaagtacagtctgaagcgcgctgactgcagggggggtgtcctgtgcag
species | Zea mays |
transcript | GRMZM2G110834_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAGEST: gi|60397677|gb|DN230493.1|DN230493
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAGEST: gi|166577869|gb|EG126841.1|EG126841
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
EST: ATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCEST: gi|91869156|gb|EB400279.1|EB400279
genomic: ATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGC
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATTTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAGEST: gi|84969395|gb|DW467833.1|DW467833
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAGEST: gi|211076057|gb|FL474784.1|FL474784
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAGEST: gi|6672167|gb|AW282342.1|AW282342
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAGEST: gi|74231927|gb|DT639841.1|DT639841
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATTTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAGEST: gi|71318559|gb|DR796040.1|DR796040
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATTTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAGEST: gi|113841671|gb|DW967677.1|DW967677
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
EST: CTAATCTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTACGTGGCTGATCACATTCTGGTCAGCAEST: gi|76910092|gb|DV163696.1|DV163696
genomic: CTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTT-CGTGGCTGATCACATTCTGGTCAGCA
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAGEST: gi|211529174|gb|FL238578.1|FL238578
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
EST: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCACCAAGTTTGGACACG GTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
genomic: CCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttg ... tcctgtgcagGTCTGTTTCCAAAGTCAATGCCTTCGTGGCTGATCACATTCTGGTCAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACCATTTAAAAAGGTGGGATCCTTCTGCTGGCTTTCCCTGGCTATATGCATTGTGGAGCTCCTAATCTGCATCAAGTTTGGACACGgtgagtgttgctcccaactcctctgcgtatatgtagcttgcaagtacagtctgaagcgcgctgactgcagggggggtgtcctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT