1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTGATGACAGTGATCCAAATGCTGCTCTAACACAGAGACGTGTGGATTCAATAAAGCAAACTTGCAAGTCATCTGGTTTGGTAAAGCAAAGgtgcgccaaatgatttaagagttgctcttctctgttccgcatcatcatccttgcttcctgactgtctgtcttgattctgtag
species | Zea mays |
transcript | GRMZM2G108225_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTGGATTCAATAAAGCAAACTTGCAAGTCATCTGGTTTGGTAAAGCAAAG GGGGTACCATTTGGAGAAGTCACCTTACAGGCCTATGCTGEST: gi|28930993|gb|CB334354.1|CB334354
genomic: GTGGATTCAATAAAGCAAACTTGCAAGTCATCTGGTTTGGTAAAGCAAAGgtgcgccaaa ... gattctgtagGGGGTACCATTTGGAGAAGTCACCTTACAGGCCTATGCTG
EST: GTGGATTCAATAAAGCAAACTTGCAAGTCATCTGGTTTGGTAAAGCAAAG GGGGTACCATTTGGAGAAGTCACCTTACAGGCCTATGCTG
genomic: GTGGATTCAATAAAGCAAACTTGCAAGTCATCTGGTTTGGTAAAGCAAAGgtgcgccaaa ... gattctgtagGGGGTACCATTTGGAGAAGTCACCTTACAGGCCTATGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATGACAGTGATCCAAATGCTGCTCTAACACAGAGACGTGTGGATTCAATAAAGCAAACTTGCAAGTCATCTGGTTTGGTAAAGCAAAGgtgcgccaaatgatttaagagttgctcttctctgttccgcatcatcatccttgcttcctgactgtctgtcttgattctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG