1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTGCTTCTCTGTTGTCTCATTGCTCTGGCAGAAGCTCATAGCTTCTCCTGAAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttatgtgttcttataagcccgagtggcggtatgaagtcatcaatattgttgttagcattcttatggctaaatgaccatccttgtttctcatgtgtag
species | Zea mays |
transcript | GRMZM2G107101_T06 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGACGAAC GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAAGCATCAEST: gi|91873510|gb|EB403467.1|EB403467
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAG GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAEST: gi|166686233|gb|EG242360.1|EG242360
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAG GTTGTTGATGCEST: gi|211384284|gb|FL369285.1|FL369285
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGC
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAG GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAEST: gi|67013730|gb|CO442479.1|CO442479
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAG GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAEST: gi|32838215|gb|CD977893.1|CD977893
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: ACATCAGCTCACCGAGGATGGAGGAAG GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAEST: gi|211421009|gb|FL393428.1|FL393428
genomic: ACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAG GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAEST: gi|13490512|gb|BG517276.1|BG517276
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: CAGCTCACCAAGGATGGAGGAAG GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAEST: gi|76293531|gb|DV033099.1|DV033099
genomic: CAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAG GTTTGT-GATGCACTTTGTGATGTCGTTTCAGCCTCACCA-CCAAGGCATCEST: gi|67032478|gb|CO461227.1|CO461227
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTT-GTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATC
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCANGGATGGAGGAAG GTTGNTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCA-GGCATCAEST: gi|211306980|gb|FL381266.1|FL381266
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAG GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAEST: gi|211167624|gb|FL375018.1|FL375018
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAG GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCAEST: gi|211533313|gb|FL400718.1|FL400718
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAG GTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttat ... tcatgtgtagGTTGTTGATGCACTTTGTGATGTCGTTTCAGCCTCACCAACCAAGGCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTTCTCTGTTGTCTCATTGCTCTGGCAGAAGCTCATAGCTTCTCCTGAAATGCAGATGTCTGCAGAAAGTACATCAGCTCACCAAGGATGGAGGAAGgtatgtttatgtgttcttataagcccgagtggcggtatgaagtcatcaatattgttgttagcattcttatggctaaatgaccatccttgtttctcatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA