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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAACACACCGAAGATTTCTTGCTCGAAATGACGGTACATATGGACCAATGCCACGGGGTAAACCGAAGGGATTACTGGCTATGCCTTTCAATACTACCgtaagtatcaggaatcatctccctttgggtgacttgatgaactggatgtcctcagatttcgttgaactgaaacttgggttctcaatttacag

Basic information

species Zea mays
transcript GRMZM2G106531_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106531_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 5'ss of exon 11
AAAAACACACCGAAGATTTCTTGCTCGAAATGACGGTACATATGGACCAATGCCACGGGGTAAACCGAAGGGATTACTGGCTATGCCTTTCAATACTACCgtaagtatcaggaatcatctccctttgggtgacttgatgaactggatgtcctcagatttcgttgaactgaaacttgggttctcaatttacag
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| || || ||||||||||||||||| ||||||   |  |  |||       | | || | |||  | ||   ||| ||   || | |||| ||||||| ||   | || | |||||||
AAAAACACACCGAAGATTTCTTGCGCGAAATGATGGTACATATGGACCCATGCCACGGGGTAAACCAAAGGGATTGCTAGCAATGCCTTTCAATACTACTgtaagt--taatatgcattgttgacttgatgtcctga-aatcttcttgtgctgcaatattgttggactgaaaatttactgcttattttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481285|gb|EY254207.1|EY254207
EST:     TGCCACGGGGTAAACCGAAGGGATTACTGGCTATGCCTTTCAATACTACC                         TCAATAGATGGCCTTTACTGTGTCGGTGACAGCTGTTTCCCCGGGCAAGGT
genomic: TGCCACGGGGTAAACCGAAGGGATTACTGGCTATGCCTTTCAATACTACCgtaagtatca ... caatttacagTCAATAGATGGCCTTTACTGTGTCGGTGACAGCTGTTTCCCCGGGCAAGGT