Sequence
atgc intronic sequence ATGC exonic sequenceGCACCATGGTTGCATCTTCTCTAATGGACAAGCAAGGAAGGAAAAGCCTTCTGATGACAAGCTTTTCTGGAATGgtaatgcccttgtgttcaacaaatcatgtgtttattttctctctcaatcagcaaatggagggttcatattcacttttttctcccttgaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G098011_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g04190.1 (Oryza sativa), 5'ss of exon 11
GCACCATGGTTGCATCTTCTCTAATGGACAAGCAAGGAAGGAAAAGCCTTCTGATGACAAGCTTTTCTGGAATGgtaatgcccttgtgttcaacaaatcatgtgtttattttctctctcaatcagcaaatggagggttcata--ttcact-tttttctcccttgaag
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GTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCTGATAACAAGCTTTTCTGGCATGgta-taccattatctaggataaaccatgtttttgtctttcacaatattgaaacgaaagtttgcttaaaagttcactgcttctcccttttgaag
upper sequence: GRMZM2G098011_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g04190.4 (Oryza sativa), 5'ss of exon 10
--------------------------GCACCATGGTTGCATCTTCTCTAATGGACAAGCAAGGAAGGAAAAGCCTTCTGATGACAAGCTTTTCTGGAATGgtaatgcccttgtgttcaacaaatcatgtgtttattttctctctcaatcagcaaatggagggttcata--ttcact-tttttctcccttgaag
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TCTGATGGTATATATATTTCTGATAGGTACAATGATTGCATCTTCTCTGATGGACAAGCAAGGAAGGAAGAGCCTTCTGATAACAAGCTTTTCTGGCATGgta-taccattatctaggataaaccatgtttttgtctttcacaatattgaaacgaaagtttgcttaaaagttcactgcttctcccttttgaag
upper sequence: GRMZM2G098011_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 11
GCACCATGGTTGCATCTTCTCTAATGGACAAGCAAGGAAGGAAAAGCCTTCTGATGACAAGCTTTTCTGGAATGgtaatgcccttgtgttcaacaaatcatgtgtttattttctctctcaatcagcaaatggagggttcat-attcacttttttctcccttgaag--------------
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GAACTTGTATTGCTTCCTCCTTAATGGACAAACAAGGAAGGAAAAGTCTCCTTATCACAAGCTTTAGTGGGATGgtaataga--tgttttcggca---cacatcttgctagacctaaagcataaaatgttagatattacatgatggactaatgacatccctgaaaaatcacaagtttaa
upper sequence: GRMZM2G098011_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 11
GCACCATGGTTGCATCTTCTCTAATGGACAAGCAAGGAAGGAAAAGCCTTCTGATGACAAGCTTTTCTGGAATGgtaatgcccttgtgttcaacaaatcatgtgtt--tattttctctctcaatcagcaaatggagggttcatattcacttttttctcccttgaag--------
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GCACAGCCATAGCATCCTCTTTGATGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGGATGgtactgttatttcctatataaaactatttattcctataaagttcttaaattggtacattcttagtatattccttatcggatcaagcaggtagcctgaatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32907066|gb|CF011879.1|CF011879EST: TGGACAAGCAAGGAAGGAAAAGTCTTCTGATGACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
genomic: TGGACAAGCAAGGAAGGAAAAGCCTTCTGATGACAAGCTTTTCTGGAATGgtaatgccct ... tcccttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACCATGGTTGCATCTTCTCTAATGGACAAGCAAGGAAGGAAAAGCCTTCTGATGACAAGCTTTTCTGGAATGgtaatgcccttgtgttcaacaaatcatgtgtttattttctctctcaatcagcaaatggagggttcatattcacttttttctcccttgaag
- - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT