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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGCTGAAGAAGCTGCAGCAGCTAAGGAGGCAGCGCTGGAAGAATCTCTTTGCGACACACAGAATTCTGAGGTTGAGAGTGCCATGACTCCTAGAAAGgtactgtacagattggcatgcctcaagttctttatttttctcttttgggtggttgtagtgggtgttttttttgagggggggggggggtcactcttctgca...

Basic information

species Zea mays
transcript GRMZM2G096389_T05
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29544564|gb|CB604944.1|CB604944
EST:     TTTGCGACACACAGAATTCTGAGGTTGAGAGTGCCATGACTCCTAGAAAG                         GGTTTAAGTGGAGATAAATCTTCGAAAATGGGATCTGAGGGACTCATAAAT
genomic: TTTGCGACACACAGAATTCTGAGGTTGAGAGTGCCATGACTCCTAGAAAGgtactgtaca ... cttcaagcagGGTTTAAGTGGAGATAAATCTTCGAAAATGGGATCTGAGGGACTCATAAAT
EST: gi|211023732|gb|FL449221.1|FL449221
EST:     TTTGCGACACACAGAATTCTGAGGTTGAGAGTGCCATGACTCCTAGAAAG                         GGTTTAAGTGGAGATAAATCTTCGAAAATGGGATCTGAGGGACTCATAAAT
genomic: TTTGCGACACACAGAATTCTGAGGTTGAGAGTGCCATGACTCCTAGAAAGgtactgtaca ... cttcaagcagGGTTTAAGTGGAGATAAATCTTCGAAAATGGGATCTGAGGGACTCATAAAT
EST: gi|76018788|gb|DT945958.1|DT945958
EST:     TTTGCGACACACAGAATTCTGAGGTTGAGAGTGCCATGACTCCTAGAAAG                         GGTTTAAGTGGAGATAAATCTTCGAAAATGGGATCTGAGGGACTCATAAAT
genomic: TTTGCGACACACAGAATTCTGAGGTTGAGAGTGCCATGACTCCTAGAAAGgtactgtaca ... cttcaagcagGGTTTAAGTGGAGATAAATCTTCGAAAATGGGATCTGAGGGACTCATAAAT
EST: gi|211122767|gb|FL444236.1|FL444236
EST:     TTTGCGACACACAGAATTCTGAGGTTGAGAGTGCCATGACTCCTAGAAAG                         GGTTTAAGTGGAGATAAATCTTCGAAAATGGGATCTGAGGGACTCATAAAT
genomic: TTTGCGACACACAGAATTCTGAGGTTGAGAGTGCCATGACTCCTAGAAAGgtactgtaca ... cttcaagcagGGTTTAAGTGGAGATAAATCTTCGAAAATGGGATCTGAGGGACTCATAAAT