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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAACCGGCACGCCAAGGACGAGGCCACCATCGCCGCGCACTGGGACGACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacagtagtgcgcgcggccgtcgtcctcgcggcggcatgggcgaatcggtcggtcgtcatgcgagcgctcgggcgcccttcactgactcgggtgcccttcttctatcttgtctgtcccag

Basic information

species Zea mays
transcript GRMZM2G095126_T02
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110489816|gb|EE013039.1|EE013039
EST:     ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG                         CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: gi|71323535|gb|DR798428.1|DR798428
EST:     ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG                         CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTTGACGTCGCG
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: gi|161580098|gb|EY955473.1|EY955473
EST:     CGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG                         CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
genomic: CGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: gi|88753305|gb|DY537446.1|DY537446
EST:     ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG                         CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: gi|94473544|gb|EB702502.1|EB702502
EST:     ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG                         CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTTGACGTCGCG
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: gi|148929477|gb|EC875592.2|EC875592
EST:     ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG                         CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTTGACGTCGCG
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: gi|5740192|gb|AI947882.1|AI947882
EST:     ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG                         CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: gi|149080680|gb|EE169738.2|EE169738
EST:     ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG                         CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
EST: gi|71767715|gb|DR965652.1|DR965652
EST:     ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTG                         CACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG
genomic: ACATCGGCCTCCCCGCCGGCACGCCCGTCGAGGCCAGGGACCTGTGGCTGgtacgtacag ... tctgtcccagCACGAGACGTTGGACGCCACGTTCACGGACAAGATGAGCTTCGACGTCGCG