Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTGTCTTAAGTGGCCTTCTTGCAGCATTTGCTTGGCCTGCTACGTTGCTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaaacccttgtagtacaatgtcttgtgtcaaactggcgaagtttccaatactaaaatttctctgtgctaatatactagttatctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcag

Basic information

species Zea mays
transcript GRMZM2G092776_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g02170.1 (Oryza sativa), 5'ss of exon 9
GAACTGTCTTAAGTGGCCTTCTTGCAGCATTTGCTTGGCCTGCTACGTTGCTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaaacccttgtagtacaatgtcttgtgtcaaactggcgaagtttccaatactaaaatttctctgtgctaatatactagttatctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcag
|||| || |||||||| ||||||||||||||||| ||||| |||||  ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||   | | |    |||| |||    || ||  |||| | | | | | | |  || | | |     |  || |  ||||| |     |  | |                                    
GAACCGTATTAAGTGGTCTTCTTGCAGCATTTGCATGGCCAGCTACACTGCTTGCGGCTACAGACTTTATTGATAGTAAATGGTCTGTTGCTATTGACAGgtaattgcaaactctcccatttc----tcttatgttg--cttgcagagttgc-agtgc-acactgactatctacagtattggtattcttctgttgatcgacacataag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110536646|gb|EE040761.1|EE040761
EST:     CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG                         ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: gi|149106666|gb|EE188560.2|EE188560
EST:     CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG                         ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: gi|67020360|gb|CO449109.1|CO449109
EST:     CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG                         ATCAGATTAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTTAGGGACTGC
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGC
EST: gi|89252188|gb|DY623974.1|DY623974
EST:     CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG                         ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: gi|74233198|gb|DT641112.1|DT641112
EST:     CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCCATCGACAG                         ATCAGATAAAGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: gi|148966542|gb|EE017566.2|EE017566
EST:     TTGCCGCTACAGATTTTTATTGATAGTAAATGGTTTGTTGCTATCGACAG                         ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTTTTAAGGGACTGCA
genomic: TTGCCGCTACAGA-TTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: gi|211299421|gb|FL314585.1|FL314585
EST:     CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCCATCGACAG                         ATCAGATAAAGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: gi|91877535|gb|EB407492.1|EB407492
EST:     CAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG                         ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
genomic: CAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
EST: gi|110960194|gb|EE180246.1|EE180246
EST:     TTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG                         ATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA
genomic: TTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGCA