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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTGTCTTAAGTGGCCTTCTTGCAGCATTTGCTTGGCCTGCTACGTTGCTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaaacccttgtagtacaatgtcttgtgtcaaactggcgaagtttccaatactaaaatttctctgtgctaatatactagttatctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcag

Basic information

species Zea mays
transcript GRMZM2G092776_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g02170.1 (Oryza sativa), 5'ss of exon 9
GAACTGTCTTAAGTGGCCTTCTTGCAGCATTTGCTTGGCCTGCTACGTTGCTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaaacccttgtagtacaatgtcttgtgtcaaactggcgaagtttccaatactaaaatttctctgtgctaatatactagttatctgtagtgtacctaacagcttgtttagcgaactgatgaactgtatcctctcag
|||| || |||||||| ||||||||||||||||| ||||| |||||  ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||   | | |    |||| |||    || ||  |||| | | | | | | |  || | | |     |  || |  ||||| |     |  | |                                    
GAACCGTATTAAGTGGTCTTCTTGCAGCATTTGCATGGCCAGCTACACTGCTTGCGGCTACAGACTTTATTGATAGTAAATGGTCTGTTGCTATTGACAGgtaattgcaaactctcccatttc----tcttatgttg--cttgcagagttgc-agtgc-acactgactatctacagtattggtattcttctgttgatcgacacataag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67020360|gb|CO449109.1|CO449109
EST:     CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG                         ATCAGATTAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTTAGGGACTGC
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAGGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGC
EST: gi|84976568|gb|DW474990.1|DW474990
EST:     CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAG                         ATCAGATAAGGCACCGAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGC
genomic: CTTGCCGCTACAGATTTTATTGATAGTAAATGGTCTGTTGCTATCGACAGgtaaatgcaa ... atcctctcagATCAGATAAGGCAG-GAAAAATGCTTGCAGAAGTGCTTCTTAAGGGACTGC