1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcaggggcggagccagcccttttttgggggtcagctgaccccggtaaatttctgaatatctaatagaaaatggtgttaataacaatagttctata...
species | Zea mays |
transcript | GRMZM2G090087_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACEST: gi|67019711|gb|CO448460.1|CO448460
genomic: T-TCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAAC
EST: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGAEST: gi|211120257|gb|FL200678.1|FL200678
genomic: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: AAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGAEST: gi|67020094|gb|CO448843.1|CO448843
genomic: AAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: TTTCTGAAAGAA-GAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGAEST: gi|33101148|gb|CF061108.1|CF061108
genomic: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGEST: gi|18659076|gb|BM500142.1|BM500142
genomic: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAG
EST: TGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGAEST: gi|67026280|gb|CO455029.1|CO455029
genomic: TGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: TTCTGAAAGAAG-AAGCTTGNNAGATT-A-CAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAEST: gi|67024223|gb|CO452972.1|CO452972
genomic: TTCTGAAAGAAGGAAGCTTGA-AGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGA
EST: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGAEST: gi|24773212|gb|CA408466.1|CA408466
genomic: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGAEST: gi|67023454|gb|CO452203.1|CO452203
genomic: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GGTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGAEST: gi|32846970|gb|CD986651.1|CD986651
genomic: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTAAAAATACGAEST: gi|33102441|gb|CF062401.1|CF062401
genomic: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: ATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGAEST: gi|211120258|gb|FL200679.1|FL200679
genomic: ATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGAEST: gi|32847832|gb|CD987513.1|CD987513
genomic: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTAAAAATACGAEST: gi|211120256|gb|FL200677.1|FL200677
genomic: TTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAACCTTCTCAAAATAAGA
EST: AAGATTTAACAATTGGTCCAGTCCTTACA GTTACTACAGAAGCCATGATAGAGCACATGAACAACCCTTCTCAAAATAAGEST: gi|211228712|gb|FL216930.1|FL216930
genomic: AAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCACATGAACAA-CCTTCTCAAAATAAG
EST: TCTGAAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTTACA GTTACTACAGAAGCCATGATAGAGCA
genomic: TCTGAAA-GAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTT-ACAgtaagtcagg ... tctgatccagGTTACTACAGAAGCCATGATAGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGGTCTTCTAGTGGTCTGCTTGAGAAAATGAAGAAACTTTCTGAAAGAAGGAAGCTTGAAGATTTAACAATTGGTCCAGTCCTTACAgtaagtcaggggcggagccagcccttttttgggggtcagctgaccccggtaaatttctgaatatctaatagaaaatggtgttaataacaatagttctata
- - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA