1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGCGCCTTATGTTGGCTCACAACTTAAACTGCGTGATGATCTATTTTGGTTTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAGgtgatgtttattgctactctggatgttttgatgattatatgggcatattttccctcatcctaacactttttatttctttcag
species | Zea mays |
transcript | GRMZM2G089259_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTCATTTCAG AATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTGEST: gi|76012906|gb|DT940076.1|DT940076
genomic: TTTCATTTCAGgtgatgttta ... tttctttcagAATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTG
EST: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAG AATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTGEST: gi|50336815|gb|CO531941.1|CO531941
genomic: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAGgtgatgttta ... tttctttcagAATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTG
EST: GGTGGCTTATACAGTTCATTTCATTTCAG AATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTGEST: gi|148994787|gb|EE034232.2|EE034232
genomic: GGTGGCTTATACAGTTCATTTCATTTCAGgtgatgttta ... tttctttcagAATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTG
EST: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAG AATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTGEST: gi|60356662|gb|DN223635.1|DN223635
genomic: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAGgtgatgttta ... tttctttcagAATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTG
EST: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAG AATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTGEST: gi|71329463|gb|DR801452.1|DR801452
genomic: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAGgtgatgttta ... tttctttcagAATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTG
EST: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAG AATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTGEST: gi|29129794|gb|CB380498.1|CB380498
genomic: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAGgtgatgttta ... tttctttcagAATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTG
EST: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAG AATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTGEST: gi|71321199|gb|DR797301.1|DR797301
genomic: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAGgtgatgttta ... tttctttcagAATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTG
EST: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAG AATGCTTTTGAGCTGGCAACATTCTTATGGTCTTTG
genomic: TTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAGgtgatgttta ... tttctttcagAATGCTTTTGAGCTGGCAACATTCTTATGGTCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGCCTTATGTTGGCTCACAACTTAAACTGCGTGATGATCTATTTTGGTTTGGAAAGCCTCGGGTACTCTGGTGGCTTATACAGTTCATTTCATTTCAGgtgatgtttattgctactctggatgttttgatgattatatgggcatattttccctcatcctaacactttttatttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG