Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACTgttagtatcatcaacaaaattcttcttttctaaagctatgttcttttcttttattaatcatttggtcgccattctcttcag

Basic information

species Zea mays
transcript GRMZM2G082855_T05
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082855_T04 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 5'ss of exon 11
AGACCTTAGTGAGAATGAACTGGTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACTgttagtatcatcaacaaaa--ttcttcttttctaaagctatgttcttttcttttattaatcatttggtcgccattctcttcag
|||||| |||||||| || ||||| ||||| |||||| ||||||| ||||| || ||||| || || ||||||||||||||||||   | |  ||||| ||  || |   |   ||||| |||| | | |  | |   ||| || ||  ||||||
AGACCTGAGTGAGAACGAGCTGGTAGGGCCCATTCCTTCTATACTGGGCAATCTATCCTATACTGGAAAACTgttagtatcatcagtcagactttctttttcactgagattgctttcttctcttctctaacacctactgtcaccttttccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148940443|gb|EC885241.2|EC885241
EST:     GTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACT                         CTATTTACATGGCAACAAACTCACTGGACATATACCAC
genomic: GTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACTgttagtatca ... ttctcttcagCTATTTACATGGCAACAAACTCACTGGACATATACCAC
EST: gi|149079906|gb|EE168912.2|EE168912
EST:     GTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCCAACT                         CTATTTACATGGCAACAAACTCACTGGACATATACCACCAGAACTGGGG
genomic: GTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACTgttagtatca ... ttctcttcagCTATTTACATGGCAACAAACTCACTGGACATATACCACCAGAACTGGGG
EST: gi|148964982|gb|EC906062.2|EC906062
EST:     GTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACT                         CTATTTACATGGCAACAAACTCACTGGACATATACCACCAGAACTGGGGAA
genomic: GTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACTgttagtatca ... ttctcttcagCTATTTACATGGCAACAAACTCACTGGACATATACCACCAGAACTGGGGAA
EST: gi|101383199|gb|EB813654.1|EB813654
EST:     GTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACT                         CTATTTACATGGCAACAAACTCACTGGACATATACCACCAGAACTGGGGAA
genomic: GTGGGGCCTATTCCTCCTATACTTGGCAACCTGTCCTACACAGGCAAACTgttagtatca ... ttctcttcagCTATTTACATGGCAACAAACTCACTGGACATATACCACCAGAACTGGGGAA