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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTAAAATCGTGTTTACAAATGGCTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgccagagctccatatacgagcgacttatcgcgctgtgcctgtgcaagtgcttcgctttagatagattgctttgttttttgtgtactgatagatgtctcacaacacatgcag

Basic information

species Zea mays
transcript GRMZM2G082502_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082502_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os10g36780.2 (Oryza sativa), 5'ss of exon 11
CTTCTAAAATCGTGTTTACAAATGGCTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgccagagctccatatacgag-----cgacttatcgcgctgtgcctgtgcaagtg---cttcgctttagatagat-tgctttgttttttg--tgtactgatagatgtctcacaacacatgcag
|||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| || |||||||| |||||| | ||||||    | |      ||| ||| |       | ||| | ||  | | | |||  | |||   | | ||| |   |  || | || |  ||   |  || ||| |  || |     |||||  || ||
CTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttcaaagttctcatctactaatatgttggcttgttgctatctccatgtttaggtgtagccttgctctttgtgtatctactctacttgcagcatgcactaactgaggctcgccaacatttgtag

upper sequence: GRMZM2G082502_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os10g36780.4 (Oryza sativa), 5'ss of exon 10
-------------------------CTTCTAAAATCGTGTTTACAAATGGCTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgccagagctccatatacgagc-----gacttatcgcgctgtgcctgtgcaagt---gcttcgctttagatagat-tgctttgttttttg--tgtactgatagatgtctcacaacacatgcag
                         |||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| || |||||||| |||||| | ||||||    | |      ||| ||| |       | ||| | ||  | | | |||  | ||   || | ||| |   |  || | || |  ||   |  || ||| |  || |     |||||  || ||
CGATTTTGCATGAAAAATGGTGCAGCTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttcaaagttctcatctactaatatgttggcttgttgctatctccatgtttaggtgtagccttgctctttgtgtatctactctacttgcagcatgcactaactgaggctcgccaacatttgtag

upper sequence: GRMZM2G082502_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA16G24290.1 (Glycine max), 5'ss of exon 10
CTTCTAAAATCGTGTTTACAAATGGCTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgccagagctccatatacgagcgacttatcgcgctgtgcctgtgcaagtgcttcgctttagatagattgctttgttttttgtgtactgatagatgtctcacaacacatgcag
 ||| |||||  | |||||||||||||| ||||| || ||||||||||| |||||||| |  |||||    || |||||||  ||||    |  |  |     | | |||         | |  ||  | |  |||  | |       |||   | | | | ||| |   |||  | ||| | | |  |    |
GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCATCCAAGCAAACTTCATCTCCTGATAgtgagtt-gcca----tttacttttcttcaattta---------gtcaatgacattcattcattatcc-----ttgtcatctctgtggtggatatatatttctctaaaatccaacatgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71759256|gb|DR957193.1|DR957193
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
EST: gi|91055261|gb|EB165679.1|EB165679
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATTTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
EST: gi|18180479|gb|BM381689.1|BM381689
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
EST: gi|88750785|gb|DY534926.1|DY534926
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
EST: gi|8367939|gb|BE050884.1|BE050884
EST:     CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACA                         TGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA
genomic: CTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgc ... acacatgcagTGCCGTCGTACATAATGAAATGCAGAAACTGCGGACATGGGACTGATCTGA