Sequence
atgc intronic sequence ATGC exonic sequenceTTTTCAAAAACCTGTACCACATGGTGTACTTGGTATTCCTGGTTACGTGCAGTTCACCTCTCCTATCCGAAGATATGTTGACCTGCTAGCTCATTATCAGgtaaatatgcttatgaataaggaaaagttttatagcatatgggaaaataagaatttgtgcattttattttgatgttgctagctttctgatagtgtcatcaaattcattatttaacctatgtacctttgatccaaagagtatatcaacaatcaacttaatttcaaatattatgggaactaattgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G082260_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g62440.1 (Oryza sativa), 5'ss of exon 12
TTTTCAAAAACCTGTACCACATGGTGTACTTGGTATTCCTGGTTACGTGCAGTTCACCTCTCCTATCCGAAGATATGTTGACCTGCTAGCTCATTATCAGgtaaatatgcttatg-----------aataaggaaaagttttatagcatatgggaaaataagaatttgtgcattttattttgatgttgctagctttctgatagtgtcatcaaattcattatttaacctatgtacctttgatccaaagagtatatcaacaatcaacttaatttcaaatattatgggaactaattgtag
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TTTCCAAAAACCTGTACCACATGGTGTCCTCGGTATTCCTGGTTATGTACAGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgcctctgttattcctgctaatagggagaactttaacagtttccaggaacatgatggtt---acaatttacaaaga--------gctttcc-----tattatcaatttc---------------------------------------------------------------------------------
upper sequence: GRMZM2G082260_T02 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA18G25560.1 (Glycine max), 5'ss of exon 12
TTTTCAAAAACCTGTACCACATGGTGTACTTGGTATTCCTGGTTACGTGCAGTTCACCTCTCCTATCCGAAGATATGTTGACCTGCTAGCTCATTATCAGgtaaat-atgcttatgaataaggaaaagttttatagcatatgggaaaataagaatttgtgcattttattttgatgttgctagctttctgatagtgtcatcaaattcattatttaacctatgtacctttgatccaaagagtatatcaacaatcaacttaatttcaaatattatgggaactaattgtag
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TTTCAGGAAGCCAGCACGCCATGGTGTTTTGGGGATTCCTGGTTACGTTCAGTTTACATCCCCCATCCGTAGATATTTGGATCTTCTTGCTCATTATCAGgtaagtcattttcaattttataatttgcagttataatagattgcagaaggtgatgcttgctatgaaactcttatttttaaaa---tctgcaagaatcagcaaa------------------------------------------------------------------------------------
upper sequence: GRMZM2G082260_T02 (Zea mays), 5'ss of exon 11
lower sequence: AT5G02250.1 (Arabidopsis thaliana), 5'ss of exon 12
TTTTCAAAAACCTGTACCACATGGTGTACTTGGTATTCCTGGTTACGTGCAGTTCACCTCTCCTATCCGAAGATATGTTGACCTGCTAGCTCATTATCAGgtaaatatgctt-atgaataaggaa---aagttttatagcatatgggaaaataagaatttgtgcattttattttgatgttgctagctttc-tgatagtgtcatcaaattcattatttaacctatgtacctttgatccaaagagtatatcaacaatcaacttaatttcaaatattatgggaactaattgtag
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TTTCAGATGTCCTGTTCGACATGGAGTGCTTGGAATTCCTGGTTACGTTCAGTTCACGTCTCCCATTCGTCGATACATGGATCTTACTGCACACTATCAGgtaaacatttttcaccatcttgcgatttagatttgactctttttgttattgtcttaattgat-tgatctatttggatatcgatggggtacatacttgtgctttctgccttatccttca---tttgaacattc-accatatcaataagttggcaaagcgtgttgtttgaattacag----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9952682|gb|BE639145.1|BE639145EST: AGTTCACCTCTCCTATCCGAAGATATGTTGACCTGCTAGCTCATTATCAG GTTAAAGCTTTTCTTAGAGGTGACTCTCCACCATATTCAGCTGGCGATCTA
genomic: AGTTCACCTCTCCTATCCGAAGATATGTTGACCTGCTAGCTCATTATCAGgtaaatatgc ... ctaattgtagGTTAAAGCTTTTCTTAGAGGTGACTCTCCACCATATTCAGCTGGCGATCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTCAAAAACCTGTACCACATGGTGTACTTGGTATTCCTGGTTACGTGCAGTTCACCTCTCCTATCCGAAGATATGTTGACCTGCTAGCTCATTATCAGgtaaatatgcttatgaataaggaaaagttttatagcatatgggaaaataagaatttgtgcattttattttgatgttgctagctttctgatagtgtcatcaaattcattatttaacctatgtacctttgatccaaagagtatatcaacaatcaacttaatttcaaatattatgggaactaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA