1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCACCGGAGACATTGACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAGgtttgtattgactattgagcttcgaattcacatttatgtcgatttagcccattacatgcatgatccatgagcaaatttgcccaaattatttatgtctggaggagtggatcagttgctagagttatattgcaataattcttctgcag
species | Zea mays |
transcript | GRMZM2G077215_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAG GTTGCACGGACAGGCCGGATTGTTCTGCTCCGAGAGTCTGGAGTTGACTCCEST: gi|211138943|gb|FL439641.1|FL439641
genomic: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAGgtttgtattg ... tcttctgcagGTTGCACGGACAGGCCGGATTGCTCTGCTCCGAGAGTCTGGAGTTGACTCC
EST: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAG GTTGCACGGACAGGCCGGATTGCTCTGCTCCGAGAGTCTGGAGTTGACTCCEST: gi|71435321|gb|DR816371.1|DR816371
genomic: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAGgtttgtattg ... tcttctgcagGTTGCACGGACAGGCCGGATTGCTCTGCTCCGAGAGTCTGGAGTTGACTCC
EST: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAG GTTGCACGGACAGGGCCGGATTGCTCTGCTCCGAGAGTCTGGAGTTGEST: gi|211088666|gb|FL440752.1|FL440752
genomic: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAGgtttgtattg ... tcttctgcagGTTGCACGGACAGG-CCGGATTGCTCTGCTCCGAGAGTCTGGAGTTG
EST: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAG GTTGCACGGACAGGCCGGATTGCTCTGCTCCGAGAGTCTGGAGTTGACTCCEST: gi|71435320|gb|DR816370.1|DR816370
genomic: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAGgtttgtattg ... tcttctgcagGTTGCACGGACAGGCCGGATTGCTCTGCTCCGAGAGTCTGGAGTTGACTCC
EST: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAG GTTGCACGGACAGGCCGGATTGTTCTGCTCCGAGAGTCTGGAGTTGACTCC
genomic: ACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAGgtttgtattg ... tcttctgcagGTTGCACGGACAGGCCGGATTGCTCTGCTCCGAGAGTCTGGAGTTGACTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCACCGGAGACATTGACAGAATGGTTAGATTGCAAAAGATGCTAGAGCAGTATGGCATCTGTGAGgtttgtattgactattgagcttcgaattcacatttatgtcgatttagcccattacatgcatgatccatgagcaaatttgcccaaattatttatgtctggaggagtggatcagttgctagagttatattgcaataattcttctgcag
- - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - GAGCAG