1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTACGAGGAAATTCATTGATTCTGTTAAAATACCCTATCATGCGCCTTCTTTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagttgatgtttgactcattcaatgaaaatggcatagttgtgctaaattttgagctctgtggcctgtaaacag
species | Zea mays |
transcript | GRMZM2G075153_T04 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|67012102|gb|CO440851.1|CO440851
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTATGGGATCAAGGACAACCTGATCAGEST: gi|60395696|gb|DN228566.1|DN228566
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|5847526|gb|AW000605.1|AW000605
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|4804475|gb|AI665345.2|AI665345
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|5055402|gb|AI734289.1|AI734289
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|9825106|gb|BE575308.1|BE575308
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|47962545|gb|CN845254.1|CN845254
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|78122335|gb|DV540719.1|DV540719
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATTTACGGGATCAAGGACAACCTGATCAGEST: gi|6020582|gb|AW065615.1|AW065615
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|5525742|gb|AI861635.1|AI861635
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|5847377|gb|AW000456.1|AW000456
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|88750228|gb|DY534369.1|DY534369
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|76933172|gb|DV173351.1|DV173351
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATTGTCCTACTG GGATTTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAEST: gi|67012003|gb|CO440752.1|CO440752
genomic: TTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCA-TGTCCTACTGgtaagaagtt ... ctgtaaacagGGA-TTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCA
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTATGGGATCAAGGACAACCTGATCAGEST: gi|211484408|gb|FL480088.1|FL480088
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|60398293|gb|DN231109.1|DN231109
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|5791174|gb|AI977966.1|AI977966
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: GTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|148933982|gb|EC877980.2|EC877980
genomic: GTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|13515896|gb|BG518172.1|BG518172
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACATGATCAGEST: gi|32795936|gb|CD948172.1|CD948172
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|4647443|gb|AI622518.1|AI622518
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGCCAACCTGATCAGEST: gi|16379839|gb|BI993172.1|BI993172
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACNGGATCAAGGACAACCTGATCAGEST: gi|4624372|gb|AI615205.1|AI615205
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|76291941|gb|DV031509.1|DV031509
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|29946122|gb|CB815990.1|CB815990
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|60352254|gb|DN219227.1|DN219227
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|71763831|gb|DR961768.1|DR961768
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|60397682|gb|DN230498.1|DN230498
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|113823418|gb|DW940910.1|DW940910
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGEST: gi|211038907|gb|FL471521.1|FL471521
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|213192843|gb|FM182914.1|FM182914
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|149094738|gb|EE180294.2|EE180294
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATTTACGGGATCAAGGACAACCTGATCAGEST: gi|71419167|gb|DR804675.1|DR804675
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAGEST: gi|30705989|gb|CD058994.1|CD058994
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
EST: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTG GGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
genomic: TTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagtt ... ctgtaaacagGGATTCAAAGGAGCAGCGGGACATCTACGGGATCAAGGACAACCTGATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACGAGGAAATTCATTGATTCTGTTAAAATACCCTATCATGCGCCTTCTTTTGGAGGCTGTGAGAGCATAATTGATCAGCCTGCCATCATGTCCTACTGgtaagaagttgatgtttgactcattcaatgaaaatggcatagttgtgctaaattttgagctctgtggcctgtaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA