1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTAACTGTATCCCTTGATGATACTATCATCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaaattatcacattgtcatcagatcagatgtcaagaccatctggataattctagaaagaagcaatttcaattacattgttctggtgaccttgacag
species | Zea mays |
transcript | GRMZM2G074790_T03 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TCCTAGATGGTGGAGGTGACAACCAGCAGATAGATGAGAGGTGCCACCAG CTTAGAGATATCAATTGACACAAGC-CATGCTGTATTCGACAAAGAAAAGGEST: gi|67028320|gb|CO457069.1|CO457069
genomic: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaa ... accttgacagCTTAGAGA-ATCAATTGACACAAGCAC-TGCTGTATTCGACAAAGAAAAGG
EST: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAG CTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCCEST: gi|87152753|gb|DY397542.1|DY397542
genomic: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaa ... accttgacagCTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCC
EST: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAG CTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCCEST: gi|19822484|gb|BQ048508.1|BQ048508
genomic: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaa ... accttgacagCTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCC
EST: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAG CTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCCEST: gi|76911014|gb|DV164129.1|DV164129
genomic: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaa ... accttgacagCTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCC
EST: CAAACAGCAGATAGATGAGAGGTGCCAACAG CTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCCEST: gi|211181730|gb|FL012621.1|FL012621
genomic: CAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaa ... accttgacagCTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCC
EST: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGAGGAGAGGTGCCAACAG CTTAGAGACTCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCCEST: gi|22489691|gb|BU049614.1|BU049614
genomic: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaa ... accttgacagCTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCC
EST: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCACCAG CTTAGAGAATCAATTGACCCAAGCCCTGCTGTATTCGACAAAGAAAAGGCCEST: gi|87153562|gb|DY398351.1|DY398351
genomic: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaa ... accttgacagCTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCC
EST: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAG CTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCC
genomic: TCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaa ... accttgacagCTTAGAGAATCAATTGACACAAGCACTGCTGTATTCGACAAAGAAAAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAACTGTATCCCTTGATGATACTATCATCCTAGATGGTGGAGGTGACAAACAGCAGATAGATGAGAGGTGCCAACAGgtagtgaaaaattatcacattgtcatcagatcagatgtcaagaccatctggataattctagaaagaagcaatttcaattacattgttctggtgaccttgacag
- - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG