1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTTCATCGGCCACAAGAAAGATTCGGTGGCTTCTCAAATGCAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTGgtatgctatcatcttaatctacacattgctttattttaagttcagtcgtagcaaaatatttttgcagtattattgacctgcccgtgtgacttctagttag...
species | Zea mays |
transcript | GRMZM2G074466_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTG GTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGTEST: gi|32933778|gb|CF038590.1|CF038590
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTGgtatgctatc ... catgttgcagGTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTG GTGAGATGTATAGCATCEST: gi|6501140|gb|AW202513.1|AW202513
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTGgtatgctatc ... catgttgcagGTGAGATGTATAGCATC
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTG GTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGTEST: gi|166448273|gb|EG301913.1|EG301913
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTGgtatgctatc ... catgttgcagGTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGT
EST: AAAACTGCTGCAGTG GTGAGATGTATAGCATCTGACCTGGACAGGAAAAGAATATGTAGTGGTGGTEST: gi|67010825|gb|CO439574.1|CO439574
genomic: AAAACTGCTGCAGTGgtatgctatc ... catgttgcagGTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTG GTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGTEST: gi|71331763|gb|DR802742.1|DR802742
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTGgtatgctatc ... catgttgcagGTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGT
EST: AGTTGCAGGATGGCAGCTTTACAGAACTCCCCNNNNNNNCTGCTGCAGTG GTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGTEST: gi|211316118|gb|FL442718.1|FL442718
genomic: AGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAA-CTGCTGCAGTGgtatgctatc ... catgttgcagGTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTG GTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGTEST: gi|83278760|gb|DV942768.1|DV942768
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTGgtatgctatc ... catgttgcagGTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTG GTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGTEST: gi|60354992|gb|DN221965.1|DN221965
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTGgtatgctatc ... catgttgcagGTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTG GTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGT
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTGgtatgctatc ... catgttgcagGTGAGATGTATAGCATCTGACCTGGATAGGAAAAGAATATGTAGTGGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCATCGGCCACAAGAAAGATTCGGTGGCTTCTCAAATGCAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAAAAAACTGCTGCAGTGgtatgctatcatcttaatctacacattgctttattttaagttcagtcgtagcaaaatatttttgcagtattattgacctgcccgtgtgacttctagttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgcccg