1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgttagttcaacttgactgtactgggtaccactatgttgtcagctagttgatggaggacaaatgtgagttttgcag
species | Zea mays |
transcript | GRMZM2G074373_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|94479027|gb|EB707985.1|EB707985
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|31358760|gb|CD443117.1|CD443117
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|149110852|gb|EE294350.2|EE294350
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|211028676|gb|FL452179.1|FL452179
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|211028675|gb|FL452178.1|FL452178
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: AATAGGGAGTCTGCACGCAAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|71318159|gb|DR795842.1|DR795842
genomic: AATAGGGAGTCTGCACGC-AGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|60345262|gb|DN212235.1|DN212235
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|60399438|gb|DN232250.1|DN232250
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|89251780|gb|DY623566.1|DY623566
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGGGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|110190661|gb|EC872559.1|EC872559
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|40485763|gb|CK394726.1|CK394726
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAATEST: gi|24766396|gb|CA401550.1|CA401550
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
EST: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAG GCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
genomic: GAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgtta ... agttttgcagGCTGAATGTGAGGAGTTGGCTCAACGTGCTGATGTTTTAAAGCAGGAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTGCACGCAGATCTAGGTTGCGTAAACAGgtaattgttagttcaacttgactgtactgggtaccactatgttgtcagctagttgatggaggacaaatgtgagttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT