1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactggagaacattcactaacattcatgtccttggttttcttgcttctaaaacatggttgctttgcttgtaatttacacag
species | Zea mays |
transcript | GRMZM2G069758_T04 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT AAATATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGEST: gi|60397480|gb|DN230296.1|DN230296
genomic: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
EST: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT AAATATCCTGATAGCEST: gi|8102609|gb|AW927412.1|AW927412
genomic: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGC
EST: AGGATGGAGTAAT AAATATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTG
genomic: AGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactggagaacattcactaacattcatgtccttggttttcttgcttctaaaacatggttgctttgcttgtaatttacacag
- - TGGAGA
- - - GGAGAT
- - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - GATGGA