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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccatatctctttattctttcgctagaaacttctagaatggagtgtggagtacggaatatgattgttttattgtagattgattcttataggagtt...

Basic information

species Zea mays
transcript GRMZM2G069758_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069758_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 10
GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccatatctctttattctttcgctagaaacttctagaatggagtgtggagtacggaatatgattgttttattgtagattgattcttataggagtt-----
|||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||   |  | ||     |  |  |    | | | | |  |||   |   | | |     ||    || |||| | ||    |  |    ||    ||      
GAACAACCACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACGgtatgcactcaact----gtggtgacagagggatcctttctaatattg-acgtaattttccatgctctttttttgtggtttcatagtcaacatctaggtcactgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166331|gb|BM336170.1|BM336170
EST:     GATACCTGCATATTTCACG                         GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
genomic: GATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
EST: gi|33097992|gb|CF057952.1|CF057952
EST:     AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG                         GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
genomic: AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
EST: gi|86471052|gb|DY237422.1|DY237422
EST:     AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG                         GGAACTGGAGATTTGACAACTGCTCTCCTA
genomic: AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTA
EST: gi|33096068|gb|CF056062.1|CF056062
EST:     AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG                         GGAACTGGAGATTTGGCAACTGCTCTCCTACTAGGATGGAGTAAT
genomic: AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
EST: gi|17931888|gb|BM268848.1|BM268848
EST:     AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG                         GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
genomic: AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
EST: gi|67022839|gb|CO451588.1|CO451588
EST:     AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG                         GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
genomic: AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
EST: gi|40303606|gb|CK347993.1|CK347993
EST:     AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG                         GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
genomic: AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
EST: gi|16922789|gb|BM075781.1|BM075781
EST:     AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG                         GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT
genomic: AGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACGgtatatccat ... tgctatgcagGGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT