1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTGgtatgtactgttcacattgtcgtgctttgtttgagtaaataatcatttacttatctatttttttttcttaag
species | Zea mays |
transcript | GRMZM2G069676_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTG GAGGGAAGCATCACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGEST: gi|32933693|gb|CF038505.1|CF038505
genomic: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTGgtatgtactg ... ttttcttaagGAGGGAAGCATCACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGG
EST: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTG GAGGGAAGCATCACCGTTTCAAACGAGGGTEST: gi|60341753|gb|DN208726.1|DN208726
genomic: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTGgtatgtactg ... ttttcttaagGAGGGAAGCATCACCGTTTCAAACGAGGGT
EST: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTG GAGGGAAGCATCACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGGEST: gi|32832812|gb|CD972490.1|CD972490
genomic: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTGgtatgtactg ... ttttcttaagGAGGGAAGCATCACCGTTTCAAACGAGGGTACAAGAATGTAATAGACGAGG
EST: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTG GAGGGAAGCATCACCGTTTCAAACGAGGGTAEST: gi|33094155|gb|CF054149.1|CF054149
genomic: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTGgtatgtactg ... ttttcttaagGAGGGAAGCATCACCGTTTCAAACGAGGGTA
EST: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTG GAGGGAAGCATCACCGTTTCAAACGAGGGTAC
genomic: AGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTGgtatgtactg ... ttttcttaagGAGGGAAGCATCACCGTTTCAAACGAGGGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCCAGGAACTACAGTTGTGACAGATAGTGTGACTTCAGATGGATTGACTGTATTTATTGAAAATAAACTTGgtatgtactgttcacattgtcgtgctttgtttgagtaaataatcatttacttatctatttttttttcttaag
- - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - GATGGA