1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTTCTTTGGACTTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaactcacgatttctcagtttcttctctaccctttgatctttatttgcaagtggtcgcatgtagacttgatttgctagttgttactgcaataatgatgcatttgttactgaaaccttttgtcatcatttcaccag
species | Zea mays |
transcript | GRMZM2G067546_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|211108137|gb|FL478050.1|FL478050
genomic: TTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|148949555|gb|EC895022.2|EC895022
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|6828165|gb|AW331808.1|AW331808
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|67015635|gb|CO444384.1|CO444384
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: GTTTTTGCCCGGGGTTG-AGCATACGCTGTGTACAAATACAGGCTGCNNG A-TTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTEST: gi|6227124|gb|AW155653.1|AW155653
genomic: GTTTTTGCC-GGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCG-Ggtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCT
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|148962555|gb|EE013431.2|EE013431
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|60396640|gb|DN229508.1|DN229508
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|60340337|gb|DN207310.1|DN207310
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTTTGEST: gi|30032111|gb|CB833962.1|CB833962
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|60401526|gb|DN234333.1|DN234333
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|148966624|gb|EE017666.2|EE017666
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|37374458|gb|CF623588.1|CF623588
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: GAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|67019769|gb|CO448518.1|CO448518
genomic: GAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|211348715|gb|FL063226.1|FL063226
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTATGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|7216544|gb|AW562666.1|AW562666
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTG-TTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTTTGEST: gi|149099685|gb|EE185734.2|EE185734
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|67013253|gb|CO442002.1|CO442002
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|29544790|gb|CB605398.1|CB605398
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTGEST: gi|62525925|gb|DN828573.1|DN828573
genomic: TTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
EST: GGAGCATACGCTGTGTACAAATACAGGCTGCGG AGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
genomic: GGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaac ... atttcaccagAGTTACATGGATTCAGAGATCCGTGCCATCATGGCTCAGTACATGCCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGCCACTACTGTTGGCTGGAGCTTCCTCTGGGTTATTTTCTTTGGACTTGTTTTTGCCGGGGTTGGAGCATACGCTGTGTACAAATACAGGCTGCGGgtaaaacaactcacgatttctcagtttcttctctaccctttgatctttatttgcaagtggtcgcatgtagacttgatttgctagttgttactgcaataatgatgcatttgttactgaaaccttttgtcatcatttcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA